User: octaviamdl

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octaviamdl0
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Posts by octaviamdl

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Comment: C: cageR: errors when trying to use clusterCTSS
... It looks like it's `CAGEr_1.24.0` . I'll try to update the version and see if the issue goes away. Thanks! :) ...
written 7 days ago by octaviamdl0
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Comment: C: cageR: errors when trying to use clusterCTSS
... Hi lu.ne! No, my input files aren't publicly available. I've edited my post above to update what it looks like right after running `getCTSS`, prior to tpm normalization. ...
written 7 days ago by octaviamdl0
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cageR: errors when trying to use clusterCTSS
... Hi everyone! I'm trying to use the cageR package to analyze some CAGE-seq data (paired-end), however, the clusterCTSS function doesn't seem to work for me. Here is the code that I used: cage_bam <- new("CAGEset", genomeName = "BSgenome.Hsapiens.UCSC.hg19", inputFiles = bam_file, inputFile ...
R cage-seq rna-seq written 8 days ago by octaviamdl0

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