User: lucas.caue.jacintho

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Posts by lucas.caue.jacintho

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Comment: C: Hisat2 splice sites extract blank files
... That's fair. So what is the solution? use a txt file made by myself with `--known-splicesite-infile ` ? Because, I think I am not supposed to have novel splice junctions or new junctions annotations if I do not provide any file like those ones. ...
written 5 weeks ago by lucas.caue.jacintho0
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Comment: C: Hisat2 splice sites extract blank files
... Hi! Sure.! I used: gffread -E hiv.gff -T -o hiv.gtf #Conversion. hisat2_extract_splice_sites.py hiv.gtf > splice_sites.txt #Extract These same commands worked perfectly with other human gff/gtf files and. I got that "splice_sitex.txt" as a blank file ( Zero bytes ...
written 5 weeks ago by lucas.caue.jacintho0 • updated 5 weeks ago by h.mon27k
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Hisat2 splice sites extract blank files
... Hi everybody, I was trying to extract splices sites of my -gtf file but I had no success with neither "hisat2_splice_sites.py" nor "awk" command. For both options I just had a blank file as output. My final goal is use the splice sites forhisat2-build --ss --exon. For some reason, I could do that w ...
assembly alignment written 5 weeks ago by lucas.caue.jacintho0 • updated 5 weeks ago by h.mon27k

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