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2
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0
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1.7k
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Answer:
Answer: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
19 months ago by
Dan
▴ 180
0
votes
0
replies
1.1k
views
Comment:
Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
19 months ago by
Dan
▴ 180
0
votes
1
reply
1.1k
views
Comment:
Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
19 months ago by
Dan
▴ 180
0
votes
2
replies
1.1k
views
Comment:
Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
19 months ago by
Dan
▴ 180
0
votes
0
replies
1.1k
views
Comment:
Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
19 months ago by
Dan
▴ 180
0
votes
1
reply
1.1k
views
Comment:
Comment: Can I directly compare the peaks from pair-end 50 and pair-end 100 ATAC-seq?
19 months ago by
Dan
▴ 180
3
votes
10
replies
1.1k
views
Can I directly compare the regions defined by peaks from pair-end 50 and pair-end 100 ATAC-seq?
ATAC-seq
updated 19 months ago by
ATpoint
81k • written 19 months ago by
Dan
▴ 180
0
votes
0
replies
1.7k
views
Comment:
Comment: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
19 months ago by
Dan
▴ 180
5
votes
5
replies
1.5k
views
How to normalize the intensity of bigwig files based on a group of house-keeping genes in ATAC-seq data?
ATAC
bigwig
updated 19 months ago by
ATpoint
81k • written 19 months ago by
Dan
▴ 180
0
votes
1
reply
1.5k
views
Comment:
Comment: How to normalize the intensity of bigwig files based on a group of house-keeping
19 months ago by
Dan
▴ 180
0
votes
1
reply
873
views
Comment:
Comment: How to filter out the promoter-TSS peaks from the `.narrowPeak` file?
20 months ago by
Dan
▴ 180
5
votes
3
replies
873
views
How to filter out the promoter-TSS peaks from the `.narrowPeak` file?
awk
updated 20 months ago by
LChart
3.9k • written 20 months ago by
Dan
▴ 180
3
votes
1
reply
498
views
How to change the chromosome names of the head line of fasta file?
sed
updated 21 months ago by
ATpoint
81k • written 21 months ago by
Dan
▴ 180
0
votes
0
replies
6.5k
views
Comment:
Comment: Convert Granges list of peaks into consensus counts
21 months ago by
Dan
▴ 180
0
votes
0
replies
1.7k
views
Comment:
Comment: nextflow error
21 months ago by
Dan
▴ 180
0
votes
0
replies
7.0k
views
Comment:
Comment: Error: package or namespace load failed for ‘clusterProfiler’: object ‘get_fun_
21 months ago by
Dan
▴ 180
14
votes
5
replies
1.7k
views
nextflow error
nextflow
21 months ago by
Dan
▴ 180
0
votes
0
replies
2.3k
views
Comment:
Comment: How to make a TSS enrichment plot in ATAC-seq analysis?
21 months ago by
Dan
▴ 180
3
votes
2
replies
2.3k
views
How to make a TSS enrichment plot in ATAC-seq analysis?
ATAC
21 months ago by
Dan
▴ 180
4
votes
1
reply
548
views
How to define the open chromatin region in ATACseq? And how to filter the .bam file based on insert size?
ATAC
updated 21 months ago by
ATpoint
81k • written 21 months ago by
Dan
▴ 180
2
votes
2
replies
665
views
It is weird there are no reads less than 100 bp in qualimap.
qualimap
22 months ago by
Dan
▴ 180
2
votes
0
replies
665
views
Answer:
Answer: It is weird there are no reads less than 100 bp in qualimap.
22 months ago by
Dan
▴ 180
0
votes
1
reply
816
views
Comment:
Comment: why bowtie2 doesn’t report longer than 500bp inserts?
22 months ago by
Dan
▴ 180
4
votes
3
replies
816
views
why bowtie2 doesn’t report longer than 500bp inserts?
bowtie2
BAM
updated 22 months ago by
acvill
▴ 340 • written 22 months ago by
Dan
▴ 180
3
votes
2
replies
489
views
Is it possible to subsample the especially large files during alignment using Bowtie2 or bwa?
bwa
Bowtie2
updated 22 months ago by
GenoMax
141k • written 22 months ago by
Dan
▴ 180
0
votes
0
replies
317
views
How to choose the library normalization size in single cell RNA-seq data Preprocessing?
cell
single
RNA-seq
2.1 years ago by
Dan
▴ 180
0
votes
0
replies
1.2k
views
Comment:
Comment: Can I change the mouse symbol gene name to upper case to run GSEA using gmt file
2.1 years ago by
Dan
▴ 180
0
votes
2
replies
1.2k
views
Can I change the mouse symbol gene name to upper case to run GSEA using gmt files that contain upper case gene names?
GSEA
gmt
2.1 years ago by
Dan
▴ 180
0
votes
0
replies
6.5k
views
Comment:
Comment: Convert Granges list of peaks into consensus counts
2.1 years ago by
Dan
▴ 180
0
votes
0
replies
113k
views
Comment:
Comment: How To Split A Bam File By Chromosome
2.1 years ago by
Dan
▴ 180
0
votes
1
reply
113k
views
Comment:
Comment: How To Split A Bam File By Chromosome
2.1 years ago by
Dan
▴ 180
6
votes
2
replies
835
views
Can the input file name be the same as the output file in `samtools sort`?
Samtools
updated 10 months ago by
Ram
43k • written 2.2 years ago by
Dan
▴ 180
0
votes
0
replies
628
views
How to analyze whole-genome data using Picard and GATK?
whole-genome
GATK
Picard
2.3 years ago by
Dan
▴ 180
3
votes
2
replies
1.2k
views
Which is @RG read group in the head of bam files?
sam
bam
2.3 years ago by
Dan
▴ 180
0
votes
0
replies
1.2k
views
Comment:
Comment: Which is @RG read group in the head of bam files?
2.3 years ago by
Dan
▴ 180
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