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gene body coverage with RSeqQC
rna-seq qc
updated 9 days ago by ★ 1.7k • written 10 days ago by ▴ 40
0
votes
3
replies
468
views
filtering lowly expressed exons
dexseq deseq2
updated 5 months ago by 82k • written 5 months ago by ▴ 40
0
votes
2
replies
363
views
Alignment prior to passing SAM/BAM to DEXSeq
STAR DEXSeq
updated 5 months ago by ▴ 40 • written 5 months ago by ▴ 40
2
votes
8
replies
1.3k
views
differential splicing between two groups for 5 genes
diffex genes IGV
updated 10 months ago by 4.2k • written 10 months ago by ▴ 40
0
votes
1
reply
663
views
interpreting voom mean variance plots with large BCV and faint kink
filtering differential-expression voom gene
updated 14 months ago by ★ 7.0k • written 14 months ago by ▴ 40
2
votes
5
replies
965
views
comparing fragmented RNA-seq to non-fragmented RNA-seq
voom differential fragmentation normalization limma
updated 22 months ago by ★ 7.0k • written 22 months ago by ▴ 40
1
vote
2
replies
1.2k
views
limma voom -- all genes after filtering are differentially expressed
expression differential voom RNAseq limma
updated 22 months ago by ★ 7.0k • written 22 months ago by ▴ 40
1
vote
1
reply
535
views
exact counts tables for limma voom guide
limma expression differential voom
updated 22 months ago by ★ 7.0k • written 22 months ago by ▴ 40
2
votes
5
replies
1.1k
views
unsorting a bam file
star picard
updated 23 months ago by 14k • written 23 months ago by ▴ 40
2
votes
6
replies
1.3k
views
diagnosing contamination in RNA-seq data
sequencing ngs bulk nonhuman
updated 2.2 years ago by 13k • written 2.2 years ago by ▴ 40
3
votes
13
replies
6.0k
views
downloading (and using) a NCBI BLAST database
blastn blast
updated 2.2 years ago by 54k • written 2.2 years ago by ▴ 40
0
votes
3
replies
1.9k
views
different ID for 'gene name' vs 'gene synonym' in ENSEMBL.
annotations gene Ensembl name
updated 2.6 years ago by 23k • written 2.6 years ago by ▴ 40
2
votes
3
replies
1.3k
views
how htseq-count counts unstranded RNA-seq data
htseq-count RNA-seq stranded
updated 2.7 years ago by 14k • written 2.7 years ago by ▴ 40
0
votes
1
reply
1.0k
views
TMM normalization for data across two sequencing batches
tmm normalization rnaseq
updated 3.0 years ago by 82k • written 3.0 years ago by ▴ 40
1
vote
5
replies
691
views
comparing 2 datasets, one with high PCR duplicates
PCR duplicates data standardization RNA-Seq
4.1 years ago by wiscoyogi ▴ 40
1
vote
1
reply
1.8k
views
trimming A tails: clip3pAdapterSeq in star vs cutadapt
STAR RNA-Seq
4.7 years ago by wiscoyogi ▴ 40
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