User: tikshyadav19

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Posts by tikshyadav19

<prev • 18 results • page 1 of 2 • next >
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Comment: C: getSpliced() error: improper genomic coordinate
... Thank you all for your kind help. I simply want to suggest the future that if this sort of error will occur just check whether your input file is correct or not go through each and every location and check the path as well as your file name. Just keep everything simple do not complex anything. This ...
written 3 months ago by tikshyadav190
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Comment: C: How to use cxb files from cuffquant in cuffdiff?
... i too found same problem as we did processed data using cuffquant do any one had idea how to proceed with cuff_quant.cxb ...
written 3 months ago by tikshyadav190
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Comment: C: Merge transcripts from all samples:
... Yes i have two tissues thus i want DE between The 2 that donot contain any replicates (non replicates) ...
written 3 months ago by tikshyadav190
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Comment: C: Tophat2 RNA seq mapping
... i have non replicated data thus getting differential genes is easy in tophat2 ...
written 3 months ago by tikshyadav190
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getSpliced() error: improper genomic coordinate
... have searched through all the threads on this topic and I have yet to find a reasonable explanation for why I continue to encounter this error. I have already run Cufflinks on my samples, but when I attempt to run Cuffmerge cuffdiff -o /scratch/sbag/Tikshana/BANANA/cuff/Macbal_diff -b /scratc ...
assembly rna-seq written 3 months ago by tikshyadav190 • updated 3 months ago by zx87549.6k
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Comment: A: Merge transcripts from all samples:
... Why to merge transcripts? ...
written 10 months ago by tikshyadav190
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Comment: C: Merge transcripts from all samples:
... I just want to know why to merge transcripts using Stringtie? ...
written 10 months ago by tikshyadav190
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Merge transcripts from all samples:
... Why do we need to merge transcripts while assembly? I need its importance or significance ...
assembly written 10 months ago by tikshyadav190 • updated 7 months ago by dnt.disable.pls0
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Comment: C: Tophat2 RNA seq mapping
... in the above mentioned folder : /scratch/sbag/Tikshana/Ath/index/Bowtie_Ath/ ...
written 10 months ago by tikshyadav190
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Comment: C: Tophat2 RNA seq mapping
... may I know difference between Tophat2 and Hisat2 ...
written 10 months ago by tikshyadav190

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