Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
0
votes
1
reply
818
views
SnpSift to annotate vcf with multiple databases
annotate vcf SnpSift
updated 13 months ago by ▴ 60 • written 2.3 years ago by ▴ 60
0
votes
0
replies
445
views
Comment: Comment: liftover bed not matching panel gene names
20 months ago by whb ▴ 60
0
votes
1
reply
445
views
liftover bed not matching panel gene names
liftover vcf bed bedtools
20 months ago by whb ▴ 60
0
votes
0
replies
637
views
Using snpsift to annotate vcf with dbsnp and Clinvar
snpsift
23 months ago by whb ▴ 60
0
votes
0
replies
393
views
Real variant - Minimum allele frequency and alt count?
alt somatic af vcf
23 months ago by whb ▴ 60
0
votes
0
replies
525
views
Comment: Comment: Mutations in contiguous sites within a sample
23 months ago by whb ▴ 60
0
votes
2
replies
525
views
Mutations in contiguous sites within a sample
snp vcf
23 months ago by whb ▴ 60
0
votes
0
replies
891
views
Comment: Comment: Determine strand info of somatic mutations
2.0 years ago by whb ▴ 60
0
votes
1
reply
891
views
Comment: Comment: Determine strand info of somatic mutations
2.0 years ago by whb ▴ 60
0
votes
5
replies
891
views
Determine strand info of somatic mutations
strand DNA
updated 2.0 years ago by 21k • written 2.0 years ago by ▴ 60
0
votes
0
replies
1.0k
views
Comment: Comment: lofreq empty output?
2.2 years ago by whb ▴ 60
0
votes
0
replies
417
views
dbSNP specific to C57BL6J
c57bl6j dbsnp
updated 2.3 years ago by 81k • written 2.3 years ago by ▴ 60
0
votes
0
replies
436
views
detect and combine indels into one line like Mutect2 format
indels snvs vcf
2.3 years ago by whb ▴ 60
1
vote
5
replies
1.5k
views
bed intersect to get gene names from bed
bedtools intersect
updated 2.4 years ago by 35k • written 2.4 years ago by ▴ 60
0
votes
0
replies
1.5k
views
Comment: Comment: bed intersect to get gene names from bed
2.4 years ago by whb ▴ 60
0
votes
1
reply
1.5k
views
Comment: Comment: bed intersect to get gene names from bed
2.4 years ago by whb ▴ 60
0
votes
0
replies
451
views
filter Refseq file with bed? to produce coverage per gene
coverage bed refseq
2.4 years ago by whb ▴ 60
0
votes
1
reply
1.4k
views
Comment: Comment: DepthOfCoverage Error: no suitable codec found
2.4 years ago by whb ▴ 60
1
vote
3
replies
1.4k
views
DepthOfCoverage Error: no suitable codec found
Coverage DepthOfCoverage Depth
updated 2.4 years ago by 161k • written 2.4 years ago by ▴ 60
4
votes
6
replies
1.4k
views
A bash question
bash
updated 2.5 years ago by 141k • written 2.5 years ago by ▴ 60
0
votes
1
reply
650
views
What determine if a panel can be used for copy number analysis?
panel copy number targeted
updated 2.9 years ago by ★ 2.9k • written 2.9 years ago by ▴ 60
0
votes
1
reply
721
views
driver genes per sample or per group?
driver genes
updated 13 months ago by ▴ 840 • written 3.0 years ago by ▴ 60
2
votes
2
replies
851
views
Convert protein name to letter e.g. p.Arg135Trp to p.R135W
aminoacid
updated 3.0 years ago by 21k • written 3.0 years ago by ▴ 60
1
vote
2
replies
676
views
Gene expression and chromatin state
DNA expression chromatin
3.1 years ago by whb ▴ 60
0
votes
0
replies
430
views
How many variant caller is needed for somatic mutations?
SNP variant caller
3.1 years ago by whb ▴ 60
1
vote
0
replies
646
views
Tumour mutation burden vs mutant cells ratio vs Variant allele fraction
vaf maf tmb
3.1 years ago by whb ▴ 60
0
votes
0
replies
811
views
Filtering vcf with dbSNP
dbSNP filter bcftools
updated 3.1 years ago by 20 • written 3.2 years ago by ▴ 60
0
votes
0
replies
539
views
bcftools isec: tandem mutations
bcftools isesc
3.2 years ago by whb ▴ 60
0
votes
0
replies
5.3k
views
Comment: C: bcftools filter or bcftools isec to EXCLUDE dbSNP snps
3.2 years ago by whb ▴ 60
0
votes
1
reply
5.3k
views
Comment: C: bcftools filter or bcftools isec to EXCLUDE dbSNP snps
3.2 years ago by whb ▴ 60
0
votes
0
replies
545
views
Refseq file 0 coding length
gatk DepthOfCoverage
updated 3.2 years ago by 15k • written 3.2 years ago by ▴ 60
1
vote
5
replies
2.8k
views
Which adapters to use for trimming?
trimming adapters trimmomatic
updated 3.3 years ago by 20 • written 3.3 years ago by ▴ 60
0
votes
1
reply
885
views
Comment: C: NCBI build=37 in MAF despite using GRCm38 all along the variant calling workflow
3.3 years ago by whb ▴ 60
0
votes
3
replies
885
views
NCBI build=37 in MAF despite using GRCm38 all along the variant calling workflow
MAF genome reference GRCm38 NCBI build
3.3 years ago by whb ▴ 60
0
votes
0
replies
830
views
Different dbSNP files input yield different variants?
SNP gatk dbSNP mutect2
3.3 years ago by whb ▴ 60
0
votes
1
reply
889
views
Comment: C: Snpefftomaf error: Changing the format column in vcf file
3.3 years ago by whb ▴ 60
0
votes
3
replies
889
views
Snpefftomaf error: Changing the format column in vcf file
vcf maf snpeff snpefftomaf
3.3 years ago by whb ▴ 60
0
votes
0
replies
7.7k
views
Comment: C: BWA error: no ID within the read group line
3.3 years ago by whb ▴ 60
0
votes
2
replies
7.7k
views
Comment: C: BWA error: no ID within the read group line
3.3 years ago by whb ▴ 60
4
votes
12
replies
7.7k
views
6 follow
BWA error: no ID within the read group line
bwa readgroups RG parallel
updated 10 weeks ago by ▴ 10 • written 3.3 years ago by ▴ 60
0
votes
1
reply
664
views
Difference between dbSNP vcfs
dbSNP SNP vcf
updated 3.3 years ago by ▴ 10 • written 3.3 years ago by ▴ 60
0
votes
1
reply
1.1k
views
samtools idxstats showing accession number and genomic scaffold
samtools idxstats bams
updated 3.3 years ago by 161k • written 3.3 years ago by ▴ 60
0
votes
0
replies
1.8k
views
Known-variant and AF-only files of GATK Mutect2 on Mouse DNA sequencing data
gatk mutect mouse SNP baserecalibrator
3.3 years ago by whb ▴ 60
5
votes
2
replies
2.8k
views
FASTQC after trimming: how do I know if it is good enough to proceed to alignment?
FASTQC Trimming per base sequence content
3.3 years ago by whb ▴ 60
0
votes
0
replies
7.7k
views
Comment: C: BWA error: no ID within the read group line
3.3 years ago by whb ▴ 60
0
votes
1
reply
7.7k
views
Comment: C: BWA error: no ID within the read group line
3.3 years ago by whb ▴ 60
0
votes
0
replies
1.4k
views
Comment: C: Tools for DNA sequencing saturation analysis
3.3 years ago by whb ▴ 60
0
votes
1
reply
1.4k
views
Comment: C: Tools for DNA sequencing saturation analysis
3.4 years ago by whb ▴ 60
1
vote
4
replies
1.4k
views
Tools for DNA sequencing saturation analysis
snp dna saturation analysis coverage
3.4 years ago by whb ▴ 60
0
votes
2
replies
725
views
Using Parallel GNU
parallel unix trimming
updated 3.4 years ago by 43k • written 3.4 years ago by ▴ 60
51 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6