User: panacotaforcota

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Posts by panacotaforcota

<prev • 5 results • page 1 of 1 • next >
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Stringtie and prepDE
... Hello! I try to use Stringtie to generate read coverage tables for prepDE.py. So, I do ./stringtie-2.0.3/stringtie file_sorted.bam -B -e -G merged.gtf > file.gtf Is it correct that this command return gtf file or not? Then I do ./prepDE.py -i file.gtf -g ./gene.counts.csv -t ./transc ...
stringtie written 5 weeks ago by panacotaforcota0 • updated 5 weeks ago by ATpoint25k
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Condition of the chromosomes during the Chip-seq experiment for histone marks.
... Hello! In which condition are chromosomes during the Chip-seq experiment for histone marks? Is it interphase or mitotic state? ...
chip-seq written 11 weeks ago by panacotaforcota0
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Comment: C: H3K4me3 in promoter regions, which are free of nucleosomes
... Thank you for these articles! Exactly what is needed! ...
written 11 weeks ago by panacotaforcota0
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Comment: C: H3K4me3 in promoter regions, which are free of nucleosomes
... Thank you very much! It becomes clearer. So, is it true that the data from the Chip-seq experiment correspond to the active state? Or is it an inactive state, but with histone marks that are there all the time? ...
written 11 weeks ago by panacotaforcota0
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H3K4me3 in promoter regions, which are free of nucleosomes
... Hello! I'm trying to deal with histone mark and their localization on the genome. I read that marks H3K4me3 are localized in the promoter regions. But I know that promoters are free of nucleosomes. How is this possible? Do I understand correctly that the presence of histone marks from an experiment ...
h3k4me3 promoter chip-seq nucleosome written 11 weeks ago by panacotaforcota0 • updated 11 weeks ago by ATpoint25k

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