User: panacotaforcota
panacotaforcota • 0
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Posts by panacotaforcota
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... Hello!
I try to use Stringtie to generate read coverage tables for prepDE.py. So, I do
./stringtie-2.0.3/stringtie file_sorted.bam -B -e -G merged.gtf > file.gtf
Is it correct that this command return gtf file or not?
Then I do
./prepDE.py -i file.gtf -g ./gene.counts.csv -t ./transc ...
written 5 weeks ago by
panacotaforcota • 0
• updated
5 weeks ago by
ATpoint ♦ 25k
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... Hello!
In which condition are chromosomes during the Chip-seq experiment for histone marks? Is it interphase or mitotic state? ...
written 11 weeks ago by
panacotaforcota • 0
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... Thank you for these articles! Exactly what is needed! ...
written 11 weeks ago by
panacotaforcota • 0
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... Thank you very much! It becomes clearer. So, is it true that the data from the Chip-seq experiment correspond to the active state? Or is it an inactive state, but with histone marks that are there all the time? ...
written 11 weeks ago by
panacotaforcota • 0
2
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... Hello!
I'm trying to deal with histone mark and their localization on the genome. I read that marks H3K4me3 are localized in the promoter regions. But I know that promoters are free of nucleosomes. How is this possible? Do I understand correctly that the presence of histone marks from an experiment ...
written 11 weeks ago by
panacotaforcota • 0
• updated
11 weeks ago by
ATpoint ♦ 25k
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