User: Adeler001

gravatar for Adeler001
Adeler0010
Reputation:
0
Status:
New User
Last seen:
42 minutes ago
Joined:
4 months, 3 weeks ago
Email:
A********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by Adeler001

<prev • 24 results • page 1 of 3 • next >
0
votes
0
answers
61
views
0
answers
Comment: C: issues using Value Matching command in R
... here is what my table looks like Geneid Chr Start end Strand Length D4001 D4002 D4003 D4004 D4005 D4006 ENSG00000223972.4 chr1 11869 12227 + 35 8 22 33 44 ...
written 1 hour ago by Adeler0010
0
votes
0
answers
61
views
0
answers
Comment: C: issues using Value Matching command in R
... Geneid is one of the column headers of my table. I didn't think of using the `read.csv` command. i didn't install any packages . i just tried the `read.csv` command and i get this error message : Error in read.table(file = file, header = header, sep = sep, quote = quote, : more columns than c ...
written 1 hour ago by Adeler0010
0
votes
0
answers
61
views
0
answers
issues using Value Matching command in R
... Hello I am trying to use the Value Matching command in R to find a specific ensemble exon code in my exon count table generated by featurecounts for my RNAseq data . Everything works until I used the `%in%` command. Here is the script I used: tab= read.table("exons_RNA-seq_sorted.csv", heade ...
R rna-seq written 5 hours ago by Adeler0010
0
votes
1
answer
200
views
1
answers
Comment: A: RNAseq read counts generated by FeatureCounts
... ok thank you for your replies genomax and kevin ...
written 4 weeks ago by Adeler0010
0
votes
1
answer
168
views
1
answers
Comment: A: do not sort option on featurecounts
... OK thank you AT point and genomax for your responses . I really appreciate it ...
written 4 weeks ago by Adeler0010
0
votes
1
answer
168
views
1
answers
Comment: C: do not sort option on featurecounts
... Hello ATpoint and genomax thank you for your response, the reason I wanted to add the `--donotsort` option is that I was afraid that the feature counts program would not be able to properly account for paired reads that are not close in proximity due to being a part of a duplication or deletion ...
written 5 weeks ago by Adeler0010
0
votes
1
answer
168
views
1
answers
Comment: C: do not sort option on featurecounts
... thanks for answering my question , I used -p and −−donotsort together in the same command line. Would adding -p cancel out the do not sort? since you said that by adding paired-end counting (-p) it will by default sort the BAM files prior to quantification. here's my script below cd /h ...
written 5 weeks ago by Adeler0010 • updated 5 weeks ago by ATpoint28k
0
votes
1
answer
168
views
1
answers
Comment: C: do not sort option on featurecounts
... Hello ATpoint so if I use the −−donotsort option , it would just change the time to run the files? it wont change the read count numbers ? ...
written 5 weeks ago by Adeler0010
0
votes
1
answer
168
views
1
answers
Comment: C: do not sort option on featurecounts
... 1) Hello ATpoint how would I specify **paired-end ** quantification? 2) so what your saying is that −−donotsort disables the option to sort the BAM files prior to quantification. ...
written 5 weeks ago by Adeler0010
1
vote
1
answer
168
views
1
answer
do not sort option on featurecounts
... hello can someone please explain the −−donotsort option on featurecounts. Below is what the manual defines it as . but I still don't understand what it does exactly ? −−donotsort : If specified, paired end reads will not be re-ordered even if reads from the same pair were found not to be ...
featurecount rna-seq written 5 weeks ago by Adeler0010

Latest awards to Adeler001

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1219 users visited in the last hour