User: Nitish Mishra

gravatar for Nitish Mishra
Reputation:
30
Status:
New User
Location:
United States
Twitter:
nitishimtech
Last seen:
7 months, 2 weeks ago
Joined:
5 years, 6 months ago
Email:
n***********@gmail.com

about me

Posts by Nitish Mishra

<prev • 10 results • page 1 of 1 • next >
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Comment: C: How To Retrieve Tcga Mirna-Mrna Data
... You can do it by using Bioconductor tool TCGABiolink, just look the manual https://www.bioconductor.org/packages/release/bioc/vignettes/TCGAbiolinks/inst/doc/tcgaBiolinks.html. ...
written 20 months ago by Nitish Mishra30
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Getting probes name which have distance and MAF less/greater than given values
... Hi, I have data which have three column. In first column I have name, while second and third column have one or more than one semicolon (;) separated values. Now I want to print row which have distance <= 10 and MAF is >= 0.5. In column second and third column each (;) separated ordered. If s ...
R next-gen snp written 22 months ago by Nitish Mishra30
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Comment: C: How Do I Draw A Heatmap In R With Both A Color Key And Multiple Color Side Bars?
... When I am trying heatmap.3 I am getting error object 'Â' not found ...
written 2.0 years ago by Nitish Mishra30
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Comment: C: MuSic Pfam file path in Linux RHEL
... Thanks for reply. I just export the path of pfam database. I am getting result file but same time I am getting this error [tabix] the index file either does not exist or is older than the vcf file. Please reindex. ...
written 3.2 years ago by Nitish Mishra30
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MuSic Pfam file path in Linux RHEL
... Hi, I am trying to use MuSic for pfam annotation on Linux RHEL system. I already downloaded pfam, cosmic-omim data (genome-databases_1-1.tar.gz) in my home directory from http://apt.genome.wustl.edu/ubuntu/pool/main/g/genome-databases/  (as explained in Tutorial: Installation of the MuSiC suite on ...
software error next-gen written 3.2 years ago by Nitish Mishra30 • updated 3.2 years ago by nnutter200
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ROI file for MuSic
... Hi, I have question regarding ROI (region of interest file) for MuSic. When I compare ROI file provided by MuSic developers (Washington  University). I found always starting point in MuSic ROI is 1 base before Ensemble GFF starting while  end position 2  base after Enseble GFF end point. Why there ...
next-gen music written 3.2 years ago by Nitish Mishra30 • updated 3.2 years ago by Cyriac Kandoth4.8k
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Problem in music bmr coverage
... Hi, I am using this command in music genome music bmr calc-covg --bam-list /shared/unmc1/unmc_gudalab/nitish123/DbGAP/Reference-Platypus/TumorVsNormal/BAM_list --output-dir /shared/unmc1/unmc_gudalab/nitish123/DbGAP/Reference-Platypus/TumorVsNormal/coverage/ --gene-covg-dir /shared/unmc1/unmc_gud ...
software error tool music written 3.3 years ago by Nitish Mishra30 • updated 3.2 years ago by Cyriac Kandoth4.8k
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Comment: C: Dividing A Protein Sequence Into Equal Parts
... When I am giving 38 character as input it gives 4 part; 3 part with 10 charter and last with 8. While I am expecting 2 part with 10 characters and last 2 with 9 character Input: TGCATHLMNPHLNTPLMLATGCATHLMNPHLNTPLML Output: ATGCATHLMN PHLNTPLMLA TGCATHLMNP HLNTPLML 10 Char 10 char 10 char 8 char ...
written 5.4 years ago by Nitish Mishra30
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Answer: A: Dividing A Protein Sequence Into Equal Parts
... When I am giving 38 character as input it gives 4 part; 3 part with 10 charter and last with 8. While I am expecting 2 part with 10 characters and last 2 with 9 character Input: TGCATHLMNPHLNTPLMLATGCATHLMNPHLNTPLML Output: ATGCATHLMN PHLNTPLMLA TGCATHLMNP HLNTPLML 10 Char 10 ch ...
written 5.4 years ago by Nitish Mishra30
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Dividing A Protein Sequence Into Equal Parts
... Dear All, I would be happy if anyone can suggest me command (Sed or AWK one line command) to divide each line of file in equal number of part. For example divide each line in 4 part. Input: ATGCATHLMNPHLNTPLML Output: ATGCA THLMN PHLNT PLML ...
command-line written 5.4 years ago by Nitish Mishra30 • updated 4 days ago by Biostar ♦♦ 20

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Popular Question 8 months ago, created a question with more than 1,000 views. For Dividing A Protein Sequence Into Equal Parts
Popular Question 17 months ago, created a question with more than 1,000 views. For Dividing A Protein Sequence Into Equal Parts

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