User: bhanu.chandra1

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Posts by bhanu.chandra1

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Comment: C: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and lab
... Hi Ram, I am sorry, I thought the earlier comment was a different thread. i will delete one of the two. ...
written 10 days ago by bhanu.chandra10
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Comment: C: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and lab
... Hi Kevin, I have two questions: 1. When I plot with results object (after shrinkage), the number of genes (visible on the plot) passing the cutoff criteria are relatively less when compared to the plot with results object (without shrinkage). The graph looks nice with shrinkage and much more dispe ...
written 10 days ago by bhanu.chandra10
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Comment: C: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and lab
... Hi Kevin, Thank you for the response. Both of your suggestions worked :) pointSize = c(ifelse(abs(res$log2FoldChange)>2 & res$padj>0.05, > 8, 1)) I guess, there should not be '>' before 8. Thank you! ...
written 23 days ago by bhanu.chandra10
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Comment: C: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and lab
... Hi Kevin, EnhancedVolcano package was really helpful. I have two doubts: 1. when I used the below option legend=c('NS','Log (base 2) fold-change','P value', 'P value & Log (base 2) fold-change') it has printed Log (base 2) but not the Log2 (subscript). May I know how to do it. 2. when I ...
written 24 days ago by bhanu.chandra10

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