User: nmaki

gravatar for nmaki
nmaki30
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1 month, 3 weeks ago
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1 year, 1 month ago
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n****@mdibl.org

Posts by nmaki

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Comment: C: Input specific output filenames
... Thank you so much, that works perfectly! I'll be integrating this into all of my workflows right away. ...
written 13 months ago by nmaki30
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Comment: C: Input specific output filenames
... Since the code is too long to write out, and copy and pasting is giving me formatting errors, I am going to post screenshots of it https://photos.app.goo.gl/5PERRYeA9m11qT126 Thank you for your help, I really appreciate it! ...
written 13 months ago by nmaki30
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Comment: C: Input specific output filenames
... Thank you for the response! It has helped a bit, I now get a complete run of my script with fastqc and log output. I ended using something similar to the solution you posted: stdout: $((inputs.seqfile.basename)+"_console_log.txt") However, the logs themselves are named undefined_console_log. ...
written 13 months ago by nmaki30
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Input specific output filenames
... I'm working on an implementation of a fastqc wrapper written in CWL, and am wondering if there is a better way to ensure that the log outputs of my script are unique (instead of having to name them manually). outputs: output_qc_report_file type: File outputBinding: ...
cwl rna-seq written 13 months ago by nmaki30 • updated 13 months ago by Tom530

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