User: kas

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kas0
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Posts by kas

<prev • 7 results • page 1 of 1 • next >
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Error in tmp_haplo[hap2_index, ] <- hap2
... Dear respected members, Anybody using "rehh" package, kindly help me. While calculating iHS values, its showing like this, hh_map <- data2haplohh(hap_file = "bta1__hapguess_switch.out", + map_file = "12breedsmap.inp", + allele_coding = "map",chr.nam ...
rehh fastphaseformat ihs calculation r software written 3 days ago by kas0
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How to label subpopulation in fastphase?
... Dear respected members, How to make subpopulation label file for haplotype phasing in fastPHASE? Please provide any example format. Thank you in advance ...
snp data fastphase haplotype phasing written 4 days ago by kas0
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Comment: C: Rehh package input files
... Thank you for your response. I've read the manual. Here totally 5 columns are there. Last 2 for ancestral and derived alleles. But I don't have that information. How to get those ancestral and derived alleles? If I load my map file in R, It's showing like this Error in read.table(map_file, r ...
written 9 days ago by kas0 • updated 9 days ago by zx87548.2k
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Rehh package input files
... Dear respected members, How to make "map.inp" files for running rehh? I have .ped and .map files from plink. I have got the haplotype information from fastPHASE (hapguess_switch.out). Thank you in advance. ...
R rehh map.inp written 11 days ago by kas0
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Comment: C: Imputation and haplotype phasing in Bovine 50K SNP data
... Is there any reference file for phasing and imputation of Bovine 50K SNP data? please provide the link below I have tried most of the software. Help me to proceed further ...
written 15 days ago by kas0
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Comment: C: Imputation and haplotype phasing in Bovine 50K SNP data
... My aim is to do haplotype phasing using Bovine 50K chip data (in plink format). I'm asking the method to proceed further ...
written 16 days ago by kas0
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Imputation and haplotype phasing in Bovine 50K SNP data
... Hello everyone, I'm new to this haplotype phasing and imputation. I have plink output files (.ped, .map, .bed, .vcf). I don't know how to proceed further. If anybody using Beagle or shapeit for Bovine 50K SNP data, please help me. And also list any software that can be used to make .hap files. ...
software error chip-seq snp written 19 days ago by kas0

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