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Posts by christina.galonska
... Just tested seqkit amplicon which actually did exactly that (option is only available in the pre-release of version v0.11.0 so far: https://github.com/shenwei356/seqkit/releases/tag/v0.11.0-dev) Corresponding command would be: seqkit amplicon input.fastq -F GGGGCCCC -r -5:3 -f -o output.fastq ...
... Hi everyone, Is there any easy way to trim a fasta/fastq before and after a certain motif occurance? As example, this would be my sequence ATGAAACCTTTGGGGCCCCAGTCAGCTC My motif of interest would be: GGGGCCCC I want to trim let's say 5bp 5' and 3bp 3' of the motif occurance which would give you: ...
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