User: slama.slama

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Posts by slama.slama

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Comment: C: find siblings by comparing vcf files
... After converting vcf to plink format I used the following command to merge plink --bfile data1 --bmerge data2.bed data2.bim data2.fam --make-bed --out merge As a result, I had a FAM file and a MISSNP file. ...
written 9 days ago by slama.slama0
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Answer: A: find siblings by comparing vcf files
... Hello So I got a mail with the WES result. they mentioned that 2 samples, who are supposed to be twins, are not. so they put the results in different VCF files. knowing that it is not a family-based study, I don't know on what basis they said that. I tried the following command to calculate IBS ...
written 11 days ago by slama.slama0
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find siblings by comparing vcf files
... Hello When I got the results of WES in vcf format, it showed that two patients, who are supposed to be sibling, are not. I used plink for IBS/IBD estimation but didn't know how to do it (first time using plink or any other tool ). Could you please help me find a way to double-check the results. Th ...
next-gen written 17 days ago by slama.slama0 • updated 11 days ago by chrchang5235.5k

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