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2
votes
3
replies
1.2k
views
Obtain genomic coordinates of all occurrences of a small sequence (i.e: TCTTCTC) in a reference genome
biopython
binding-site
genomics
updated 17 months ago by
LauferVA
4.5k • written 17 months ago by
gspirito
▴ 10
0
votes
0
replies
475
views
Check most expressed isoform of mouse gene in specific tissue
FANTOM
gene-expression
MGI
mouse
updated 20 months ago by
Ram
44k • written 20 months ago by
gspirito
▴ 10
3
votes
1
reply
1.5k
views
ChIP-seq Peak calling from BED or WIG file
ENCODE
ChIP-seq
updated 3.2 years ago by
ATpoint
85k • written 3.2 years ago by
gspirito
▴ 10
0
votes
1
reply
604
views
Histone marks enrichment analysis
RNA-Seq
updated 3.3 years ago by
Ankit
▴ 500 • written 3.3 years ago by
gspirito
▴ 10
2
votes
1
reply
606
views
Handling RNA-seq samples from the same individual in DEseq2 analysis
DEseq2
RNA-seq
updated 3.4 years ago by
jared.andrews07
★ 18k • written 3.4 years ago by
gspirito
▴ 10
0
votes
1
reply
1.2k
views
Extract reads mapped within chosen intronic region from BAM file (no junctions)
bedtools
RNA-seq
samtools
updated 3.6 years ago by
Pierre Lindenbaum
164k • written 3.6 years ago by
gspirito
▴ 10
1
vote
1
reply
924
views
About gene expression data in FPKM stored in public databases
RNA-Seq
updated 4.2 years ago by
Istvan Albert
102k • written 4.2 years ago by
gspirito
▴ 10
0
votes
0
replies
526
views
Histone modifications enrichment from genomic coordinates
sequence
4.4 years ago by
gspirito
▴ 10
0
votes
1
reply
1.6k
views
Comment:
C: RNA-seq based gene signature analysis
4.6 years ago by
gspirito
▴ 10
3
votes
3
replies
1.6k
views
RNA-seq based gene signature analysis
RNA-Seq
updated 4.6 years ago by
Kevin Blighe
88k • written 4.6 years ago by
gspirito
▴ 10
3
votes
3
replies
1.5k
views
Unbiased clustering from bulk tissue RNA-seq?
RNA-Seq
clustering
updated 4.7 years ago by
ATpoint
85k • written 4.7 years ago by
gspirito
▴ 10
2
votes
1
reply
931
views
Chromatin states in human neurons?
ChIP-Seq
chromatin states
neuron
updated 4.9 years ago by
German.M.Demidov
★ 2.9k • written 4.9 years ago by
gspirito
▴ 10
1
vote
2
replies
915
views
How can I assess the probability of a gene being disease-related?
gene networks
gene
gene interactions
updated 5.2 years ago by
WouterDeCoster
47k • written 5.2 years ago by
gspirito
▴ 10
0
votes
1
reply
1.1k
views
Problem with Cytoskape/DyNets
DyNets
Cytoscape
gene network
5.2 years ago by
gspirito
▴ 10
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