User: Scott McKay

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Scott McKay10
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Posts by Scott McKay

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Does anyone have experience with the massiR package in R?
... Has anyone used the massiR package? I am having trouble extracting the Y Chr data. Can someone help me out? >library(massiR) >data(y.probes) >probes <- data.frame(y.probes["affy_hg_u133_plus_2"]) >dataset <- read.table(file.choose()) >massi.y.out <- massi_y(dataset, probes) ...
yprobes sex microarray massir written 8 days ago by Scott McKay10
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Comment: C: Microarray Probes to Ensembl ID or Gene ID
... Would I just download the annotation package and then run the same script as above and just swap the attribute and filter? ...
written 8 days ago by Scott McKay10
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Comment: C: Microarray Probes to Ensembl ID or Gene ID
... Its from the Affymetrix Clariom D Assay ...
written 8 days ago by Scott McKay10
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Comment: C: Microarray Probes to Ensembl ID or Gene ID
... What should I do if the array is not in biomaRt? ...
written 9 days ago by Scott McKay10
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Microarray Probes to Ensembl ID or Gene ID - clariomdhumanprobeset.db
... I am trying to pull DEG lists from multiple GEO datasets to cross analyze. Is there some way (in either R or python3) that will allow me to convert the probe IDs to something more universal? Ensembl ID, HGNC ID, or Gene ID? Please let me know. Thanks! ...
gene R probe microarray python written 10 days ago by Scott McKay10 • updated 8 days ago by Kevin Blighe48k
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massiR error when plotting: need finite 'xlim' values
... Does anyone have experience with the [massiR package](https://bioconductor.org/packages/release/bioc/html/massiR.html) in R? I have the following script: probes <- data.frame(y.probes["affy_hg_u133_plus_2"]) massi.y.out <- massi_y(set8, probes) massi_y_plot(massi.y.out) ...
R bioconductor microarray massir written 11 days ago by Scott McKay10 • updated 11 days ago by zx87548.2k
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Combining different arrays in analysis
... I am currently trying to pull expression data from multiple array datasets. Is there some way (either in R or a website) that I can use to combine these datasets so that I can perform some meta-analysis? Thanks! --a struggling grad student ...
array R written 12 days ago by Scott McKay10
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Comment: C: How to filter out the non-coding genes?
... Can you use the R script you used to figure this out? I am trying to do something similar now and am having trouble. ...
written 16 days ago by Scott McKay10
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Answer: A: How to filter out the non-coding genes?
... Can you post the R script you used to figure this out? I am having a terribly hard time trying to do something similar here. ...
written 16 days ago by Scott McKay10
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Coding vs Noncoding Genes in Hit List
... Does anyone know of a method I can use to discern which genes are coding and noncoding from my hit list? I'm trying to avoid searching for each individual gene. Thanks! ...
gene R high throughput written 16 days ago by Scott McKay10 • updated 8 days ago by Biostar ♦♦ 20

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