User: irfanwustl

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irfanwustl0
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Posts by irfanwustl

<prev • 7 results • page 1 of 1 • next >
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Answer: A: cram to bam conversion
... Solved. Seems it is a threading issue. When I have removed > -@8 from the code, there is no error or warning. ...
written 21 days ago by irfanwustl0
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Biscuit: Is alignment stochastic?
... I have WGBS pair-end fastq files. I am using [Biscuit][1] aligner. Is alignment stochastic? Can we get (slightly) different alignment from different runs on the same fastq files? [1]: https://github.com/zwdzwd/biscuit ...
biscuit alignment written 21 days ago by irfanwustl0 • updated 21 days ago by WouterDeCoster41k
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Comment: C: cram to bam conversion
... Yes. I am suspecting is it a multithreading issue? ...
written 22 days ago by irfanwustl0
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cram to bam conversion
... I am trying to convert cram file to bam file but I am getting the following error: > [E::cram_get_ref] Failed to populate reference for id 504 > [E::cram_get_ref] Failed to populate reference for id 538 > [E::cram_get_ref] Failed to populate reference for id 608 > ................... ...
genome alignment written 22 days ago by irfanwustl0
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Merging unaligned bam files
... I have two WGBS unaligned bam files (fastq files stored as unaligned bam). I am wondering can I merge those files? Does samtools merge works for unaligned bams? Thanks ...
next-gen written 5 weeks ago by irfanwustl0
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Paired Fastq files from Whole-Genome Bisulfite Sequencing?
... I am looking for some public source where I can get fastq files (paired reads) from WGBS pipeline. I am very new to genomics. Probably because of this, I could not find one on the internet. Will someone please help? Thanks in advance. ...
next-gen written 6 weeks ago by irfanwustl0 • updated 6 weeks ago by ATpoint24k
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WGBS database for cell free dna
... I am wondering is there any public database of WGBS (Whole-Genome Bisulfite Sequencing) cell-free DNA (cfDNA). I have found this [one][1]. Can anyone please direct me to some other resources. Thanks. [1]: http://www.bio-data.cn/CFEA/ ...
next-gen written 6 weeks ago by irfanwustl0 • updated 11 days ago by Biostar ♦♦ 20

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