User: irfanwustl
irfanwustl • 0
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Posts by irfanwustl
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Answer:
A: cram to bam conversion
... Solved. Seems it is a threading issue. When I have removed
> -@8
from the code, there is no error or warning. ...
written 21 days ago by
irfanwustl • 0
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... I have WGBS pair-end fastq files. I am using [Biscuit][1] aligner. Is alignment stochastic? Can we get (slightly) different alignment from different runs on the same fastq files?
[1]: https://github.com/zwdzwd/biscuit ...
written 21 days ago by
irfanwustl • 0
• updated
21 days ago by
WouterDeCoster ♦ 41k
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Comment:
C: cram to bam conversion
... Yes. I am suspecting is it a multithreading issue? ...
written 22 days ago by
irfanwustl • 0
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5 follow
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... I am trying to convert cram file to bam file but I am getting the following error:
> [E::cram_get_ref] Failed to populate reference for id 504
> [E::cram_get_ref] Failed to populate reference for id 538
> [E::cram_get_ref] Failed to populate reference for id 608
> ................... ...
written 22 days ago by
irfanwustl • 0
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... I have two WGBS unaligned bam files (fastq files stored as unaligned bam). I am wondering can I merge those files? Does
samtools merge works for unaligned bams?
Thanks ...
written 5 weeks ago by
irfanwustl • 0
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... I am looking for some public source where I can get fastq files (paired reads) from WGBS pipeline. I am very new to genomics. Probably because of this, I could not find one on the internet. Will someone please help?
Thanks in advance. ...
written 6 weeks ago by
irfanwustl • 0
• updated
6 weeks ago by
ATpoint ♦ 24k
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... I am wondering is there any public database of WGBS (Whole-Genome Bisulfite Sequencing) cell-free DNA (cfDNA). I have found this [one][1]. Can anyone please direct me to some other resources.
Thanks.
[1]: http://www.bio-data.cn/CFEA/ ...
written 6 weeks ago by
irfanwustl • 0
• updated
11 days ago by
Biostar ♦♦ 20
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