User: Negin

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Negin0
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Posts by Negin

<prev • 51 results • page 1 of 6 • next >
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Mapping DNA position to Protein Position in E. Coli
... Hi, Could someone please help me with how can I map DNA position to Protein Position and map DNA variant to Protein Variant in E. Coli? ...
bioinformatics gwas genomics sequencing written 18 days ago by Negin0 • updated 18 days ago by Emily_Ensembl21k
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sequence assemblies with phenotype labels
... Hi, How can I search for sequences with phenotype labels in ncbi? Thanks in advance ...
ncbi assembly sequence sequencing written 3 months ago by Negin0
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Comment: C: Converting VCF files into bcftools style region co-ordinates
... I have edited my question and provided an example there. ...
written 4 months ago by Negin0
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Converting VCF files into bcftools style region co-ordinates
... Hi, I was wondering if there is any tool that converts the VCF files into bcftools style region co-ordinates. By region, I mean the regions which are representing genes. Here, it is an example: CDS1 gene-id 1:1000-1040 CDS2 gene-id 2:1200-1250 I would appreciate it if someone help me with this, pl ...
gwas sequence bcftools vcftools sequencing written 4 months ago by Negin0
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Burden Analysis in GWAS
... Hi, I was wondering whether burden analysis is only for analyzing rare variants or can also be applied to the major variants! I would appreciate it if someone can help me with this, please. ...
gwas sequence burden analysis sequencing written 4 months ago by Negin0
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Comment: C: Conflicts in the VCF file
... SnpEff version SnpEff 4.3t ...
written 4 months ago by Negin0
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Conflicts in the VCF file
... Hi, I annotated my VCF file with SNPEFF, but I was wondering why the codon change which is annotated by SNPEFF (`SNPEFF_CODON_CHANGE=gaC/gaA`) is not matching my reference (G) and alternative allele (A,T) in the VCF file. I copied part of the row below: Chromosome 4482482 . G A,T 116681.7 ...
vcf gwas snpeff sequence sequencing written 4 months ago by Negin0 • updated 4 months ago by Ram32k
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Gene-Gene Interaction Databases for Bacteria
... I would appreciate it if someone suggests to me the available gene-gene interaction databases for bacteria. ...
gene-gene interaction bacteria e. coli written 4 months ago by Negin0 • updated 4 months ago by Mensur Dlakic9.0k
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Characteristic of E. Coli - phylogroup A
... Hi, I was wondering what the main characteristics of E. Coli phylogroup A are? Can they be dangerous? I would appreciate it if someone could help me or introduce good sources regarding that to me, please. ...
bacteria e. coli phylogroups escherichia coli written 7 months ago by Negin0
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Comment: C: Why kinship is a random effect while population structure is a fixed effect in G
... I have the same question. ...
written 7 months ago by Negin0

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Popular Question 14 days ago, created a question with more than 1,000 views. For Per Base Sequence Content

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