User: negin.malekian.b

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Comment: C: PL field in gvcf file equal to zero
... Thanks for your answer, but could you please explain your answer more as I am quite new in this field and didn't understand you totally!? ...
written 14 days ago by negin.malekian.b0
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PL field in gvcf file equal to zero
... I have a genomics data from Bacteria (E. Coli.) and used GATK 4 for variant calling. I have noticed that for some samples and some loci, PL is 0,0. Can anyone please explain this? eg. NC_000913 4473651 . C . . . GT:AD:DP:GQ:PL 0:2,0:2:0:0,0 How can we interpret that? becuase in this case, the GT ...
vcf gatk bp_resolution gvcf written 14 days ago by negin.malekian.b0

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