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Posts by negin.malekian.b
... Thanks for your answer, but could you please explain your answer more as I am quite new in this field and didn't understand you totally!? ...
... I have a genomics data from Bacteria (E. Coli.) and used GATK 4 for variant calling. I have noticed that for some samples and some loci, PL is 0,0. Can anyone please explain this? eg. NC_000913 4473651 . C . . . GT:AD:DP:GQ:PL 0:2,0:2:0:0,0 How can we interpret that? becuase in this case, the GT ...
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