User: madraghrua1690

madraghrua1690 • 0

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Posts by madraghrua1690

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Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)

... ./loadDump.sh I simply name my ID file IDs.txt and put it into the same directory as the script. I just figured it out - it was a $PATH problem into the sra bin directory after all. All appears to be working fine now. Thank you very much for your excellent script! ...

written 13 months ago by madraghrua1690 • 0

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Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)

... Thanks for your reply. I've copied the LoadDump script on your page into a file, made it an executable and am running it with a list of SRA IDs as you describe in your text. I have installed the sra toolkit, parallel, prefetch, parallel-fastq-dump and added their locations to my $PATH environment. ...

written 13 months ago by madraghrua1690 • 0

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Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)

written 13 months ago by madraghrua1690 • 0

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Problems with FirebrowseR - query limit sizes

... Hi Folks I'm a FirebrowseR newbie. I'm working through the tutorial for FireBrowseR from the Broad Institute. Through a set of manipulations I want to now retrieve data on about 152 patient samples. Based on the tutorial I'm using the following code: diff.Exp.Genes = c("ESR1", "GATA3", "XBP1", ...

firebrowser _firebrowser_ written 16 months ago by madraghrua1690 • 0 • updated 16 months ago by Mdeng • 510

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