User: madraghrua1690

madraghrua1690 • 0

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Posts by madraghrua1690

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Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)

... ./loadDump.sh I simply name my ID file IDs.txt and put it into the same directory as the script. I just figured it out - it was a $PATH problem into the sra bin directory after all. All appears to be working fine now. Thank you very much for your excellent script! ...

written 8 months ago by madraghrua1690 • 0

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Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)

... Thanks for your reply. I've copied the LoadDump script on your page into a file, made it an executable and am running it with a list of SRA IDs as you describe in your text. I have installed the sra toolkit, parallel, prefetch, parallel-fastq-dump and added their locations to my $PATH environment. ...

written 8 months ago by madraghrua1690 • 0

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Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)

written 8 months ago by madraghrua1690 • 0

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Problems with FirebrowseR - query limit sizes

... Hi Folks I'm a FirebrowseR newbie. I'm working through the tutorial for FireBrowseR from the Broad Institute. Through a set of manipulations I want to now retrieve data on about 152 patient samples. Based on the tutorial I'm using the following code: diff.Exp.Genes = c("ESR1", "GATA3", "XBP1", ...

firebrowser _firebrowser_ written 11 months ago by madraghrua1690 • 0 • updated 11 months ago by Mdeng • 510

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