User: elienesantossilva09

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Posts by elienesantossilva09

<prev • 4 results • page 1 of 1 • next >
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Generating consensus sequence from bam file
... Hello, I am trying to generate consensus bam file sequences. For this I used the commands recommended by the link below. https://samtools.github.io/bcftools/howtos/consensus-sequence.html`][ I did a test and managed to generate a consensus in fasta format. but when I used the command below (f ...
assembly sequence written 1 day ago by elienesantossilva090 • updated 1 day ago by finswimmer12k
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How to generate consensus fasta uninterleaved from bam?
... Hello, I first extracted the fasta format consensus from various bam files. I used two different commands for the same purpose and both resulted in an interspersed fasta, from what I understand the overlapping reads are interspersed. However, I was wondering if there is a way to get the non-interl ...
genome sequence written 4 days ago by elienesantossilva090 • updated 4 days ago by swbarnes26.5k
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Comment: C: how to extract just one fast sequence from a multiple sequence vcf?
... I received this mission. I confess that I found it strange because until then I thought that vcf was a file that contained only the variants and information of them. então não é possível? ...
written 11 days ago by elienesantossilva090
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how to extract just one fast sequence from a multiple sequence vcf?
... Good afternoon. I apologize if my question is obvious, but I am new to the area and have difficulty. I have a vcf file of many sequences, and I only need to extract some sequences (2) in fasta format. So far I couldn't get a command on gat to perform this extraction. could someone point me to some ...
genome sequence next-gen written 11 days ago by elienesantossilva090

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