User: elienesantossilva09

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Posts by elienesantossilva09

<prev • 7 results • page 1 of 1 • next >
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Comment: A: Differently sized sequences in the clustal omega alignment
... thank you very much, thanks for your comment I understood and redone right ...
written 6 months ago by elienesantossilva090
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Differently sized sequences in the clustal omega alignment
... Hello, I used clustal omega software to align 401 sequences mitochondrial DNA. However, I had difficulty understanding the manual and the input options. But still I used the following command: clustalo -i teste_rn -o teste --threads=16 --outfmt=clustal -v --force I received the followin ...
clustalo alignment written 6 months ago by elienesantossilva090
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Comment: A: Generating consensus sequence from bam file
... Thank you very much. It was of great help. ...
written 6 months ago by elienesantossilva090
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Generating consensus sequence from bam file
... Hello, I am trying to generate consensus bam file sequences. For this I used the commands recommended by the link below. https://samtools.github.io/bcftools/howtos/consensus-sequence.html`][ I did a test and managed to generate a consensus in fasta format. but when I used the command below (f ...
assembly sequence written 6 months ago by elienesantossilva090
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How to generate consensus fasta uninterleaved from bam?
... Hello, I first extracted the fasta format consensus from various bam files. I used two different commands for the same purpose and both resulted in an interspersed fasta, from what I understand the overlapping reads are interspersed. However, I was wondering if there is a way to get the non-interl ...
genome sequence written 6 months ago by elienesantossilva090 • updated 6 months ago by swbarnes27.5k
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Comment: C: how to extract just one fast sequence from a multiple sequence vcf?
... I received this mission. I confess that I found it strange because until then I thought that vcf was a file that contained only the variants and information of them. então não é possível? ...
written 7 months ago by elienesantossilva090
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how to extract just one fast sequence from a multiple sequence vcf?
... Good afternoon. I apologize if my question is obvious, but I am new to the area and have difficulty. I have a vcf file of many sequences, and I only need to extract some sequences (2) in fasta format. So far I couldn't get a command on gat to perform this extraction. could someone point me to some ...
genome sequence next-gen written 7 months ago by elienesantossilva090

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