User: mcs

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mcs0
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Posts by mcs

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Comment: A: error message using Kraken: does not contain necessary file taxo.k2d
... I downloaded from the link minikraken2_v1_8GB and extracted it. It is seen in my downloads as a 4.0 KiB folder. However, the kraken command modified for this version of minikraken from the Biostar handbook: kraken -db ~/refs/kraken/minikraken2_v1_8GB -fastq-input subset.fq > results.out retur ...
written 6 days ago by mcs0
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Comment: A: error message using Kraken: does not contain necessary file taxo.k2d
... Thank you. The link is for minikraken but I will be very happy to get that to work. ...
written 6 days ago by mcs0
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Comment: A: error message using Kraken: does not contain necessary file taxo.k2d
... I repeated the 2nd build; Database construction complete. [Total: 8m36.591s] (bioinfo) mcs@pop-os When I use Kraken (Biostar online workbook) I still get the error message: does not contain necessary file taxo.k2d I am guessing the database files are downloaded but Kraken2 can' ...
written 6 days ago by mcs0 • updated 6 days ago by RamRS24k
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Comment: C: error message using Kraken: does not contain necessary file taxo.k2d
... Thank you. I am trying that now. Will it overwrite the old build or do I somehow need to delete the old build? I appreciate your help. ...
written 10 days ago by mcs0
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Comment: C: error message using Kraken: does not contain necessary file taxo.k2d
... I'm sorry, half way through the "build" there was a (r --r --r) ? that stopped the build so I typed y and the build finished. ...
written 11 days ago by mcs0
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Comment: C: error message using Kraken: does not contain necessary file taxo.k2d
... There was no prior error message. ...
written 11 days ago by mcs0
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error message using Kraken: does not contain necessary file taxo.k2d
... I typed as per the manual: kraken2-build --standard --threads 24 --db download-taxonomy and that appeared to work as I got the message: Database construction complete. [Total: 43m39.729s] I don't think I was able to "clean" successfully as per the manual. I have been trying use Kraken an ...
software error written 11 days ago by mcs0

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