User: bobbyle0210

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Posts by bobbyle0210

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Counting starting and ending positions of reads in reference genome
... Hi, Currently, I am working with NGS processing data. After getting SAM/BAM file, now, I want to output a text file that indicates the starting (5 end) and ending (3 end) position of each read in the corresponding reference sequence as well as the sequence of the read. The output file may look like: ...
bedtools ngs bam sam rna-seq written 13 days ago by bobbyle02100 • updated 13 days ago by Pierre Lindenbaum123k
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Comment: C: Error when installing bedtools
... Hi, thank you for your suggestion. But after this 2 steps, I still cannot run bedtools. It showed "command not found". What can I do now? ...
written 15 days ago by bobbyle02100
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Comment: C: Error when installing bedtools
... Hi, Could you show more detailed steps for this, because I am not familar with linux yet? Should I follow this guideline: ---------- $ wget https://github.com/arq5x/bedtools2/releases/download/v2.28.0/bedtools-2.28.0.tar.gz ---------- $ tar -zxvf bedtools-2.28.0.tar.gz ---------- $ cd be ...
written 15 days ago by bobbyle02100
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Comment: C: Error when installing bedtools
... I cannot find the source to download gcc/g++. All guideline on the internet shows the use of sudo command. Could you give me some reference? ...
written 15 days ago by bobbyle02100
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Error when installing bedtools
... Dear all, When I installed bedtools from the source, after using "make" command, it showed the error as below: ---------- cc1plus: error: unrecognized command line option "-std=c++11" ---------- make[1]: *** [../../../obj//FileRecordMgr.o] Error 1 ---------- I guess the problem comes from gcc/ ...
bedtools gcc g++ rna-seq written 15 days ago by bobbyle02100

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