User: selkash2016

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Posts by selkash2016

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Comment: A: The Result Of The Mirdeep2
... What is the best pipeline for miRNA Differential expression analyssis, miRNA predicted from mirdeep2 software ...
written 21 days ago by selkash20160 • updated 21 days ago by zx87548.7k
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Comment: A: creating gtf file for bam file generated by Hisat2 using Stringtie
... **No, sir it contains miRNA sequences sir. mature, star, and precursor sequences of miRNA.** ...
written 28 days ago by selkash20160
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Comment: A: creating gtf file for bam file generated by Hisat2 using Stringtie
... **I already tried that sir but same output was generated an empty .gtf file with the command** sir another information to your knowledge my refernce genome is MIRNA data predicted using MIRDEEP2 software and I want to do DEG for those so that only i following this pipeline ...
written 29 days ago by selkash20160
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Comment: C: creating gtf file for bam file generated by Hisat2 using Stringtie
... hisat2 command -------------- **hisat2-build Nseqref.fa NseqRef** **hisat2 -p 8 -q -x NseqRef -U control_all.fq -S ControlNseq.sam** stringtie command ----------------- **stringtie -o sahaControlNseq.gtf ControlNseq.sorted.bam** **I used this command to print output but what i get was an emp ...
written 4 weeks ago by selkash20160
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Comment: C: Issue with creating table counts using StringTie *without* using a reference ann
... Hello kelvin! I am involved in doing DE calculations of miRNA present in control and stress condition, I completed the step till hisat2 and also I got output for hisat2 but stringtie is not working if I enter the command for string tie empty .gtf document only created by stringtie i am having short ...
written 4 weeks ago by selkash20160
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Comment: C: Issue with creating table counts using StringTie *without* using a reference ann
... Hello kelvin! I am involved in doing DE calculations of miRNA present in control and stress condition, I completed the step till hisat2 and also I got output for hisat2 but stringtie is not working if I enter the command for string tie empty .gtf document only created by stringtie i am having shor ...
written 4 weeks ago by selkash20160
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creating gtf file for bam file generated by Hisat2 using Stringtie
... hello, I am involved in doing DE calculations of miRNA present in control and stress condition, i completed the step till hisat2 and also i get output for hisat2 but stringtie is not working if i enter the command empty .gtf document only created by stringtie i am having shortreads data with ...
gene assembly next-gen rna-seq R written 4 weeks ago by selkash20160
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(Closed) how to work with miRPRO
... hello, please guide me, how to work with mirPRO software. thank u in advance..... ...
rna-seq mirpro mirna written 9 weeks ago by selkash20160

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