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1
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178
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Answer:
Answer: Question about vg giraffe, vg surject and Visualization tool for mapping result
1 day ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
675
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Comment:
Comment: Is vg toolkit suitable for haplotype calling?
15 days ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
675
views
Comment:
Comment: Is vg toolkit suitable for haplotype calling?
20 days ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
675
views
Comment:
Comment: Is vg toolkit suitable for haplotype calling?
21 days ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
675
views
Answer:
Answer: Is vg toolkit suitable for haplotype calling?
23 days ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
506
views
Comment:
Comment: What does vg autoindex mpmap do?
4 weeks ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
506
views
Answer:
Answer: What does vg autoindex mpmap do?
5 weeks ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
378
views
Answer:
Answer: Annotate GFA with coverage depth
5 weeks ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
803
views
Comment:
Comment: vg mod changes a graph, but what about a gam or gamp to the original graph?
4 months ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
715
views
Answer:
Answer: Which pangenome graph (full/clip/filter/sampled) to use when align RNA-seq with
4 months ago by
Jordan M Eizenga
▴ 740
0
votes
2
replies
803
views
Comment:
Comment: vg mod changes a graph, but what about a gam or gamp to the original graph?
5 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
455
views
Answer:
Answer: vg: transfer FASTQ comment to SAM tag a la `bwa mem -C`
5 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
395
views
Comment:
Comment: split gamp by chromosome or extract specific regions.
5 months ago by
Jordan M Eizenga
▴ 740
0
votes
0
replies
976
views
Comment:
Comment: vg autoindex memory issues Signal 6 has occured
5 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
507
views
Answer:
Answer: fragment size estimation during vg mpmap and rpvg
5 months ago by
Jordan M Eizenga
▴ 740
2
votes
0
replies
461
views
Answer:
Answer: Does vg provides an api?
7 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
1.0k
views
Comment:
Comment: question about Varias of graph format. How to get the sequence and source of a
8 months ago by
Jordan M Eizenga
▴ 740
0
votes
0
replies
719
views
Comment:
Comment: VG - Verifying presence or absence of variants in Pangenome Graph
8 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
719
views
Answer:
Answer: VG - Verifying presence or absence of variants in Pangenome Graph
8 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
1.5k
views
Comment:
Comment: sequenceTubeMap input files
9 months ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
1.3k
views
Comment:
Comment: advice for visualizing a graph genome constructed by "vg construct"
9 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
1.5k
views
Comment:
Comment: sequenceTubeMap input files
9 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
1.5k
views
Comment:
Comment: sequenceTubeMap input files
9 months ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
1.5k
views
Comment:
Comment: sequenceTubeMap input files
9 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
1.3k
views
Comment:
Comment: advice for visualizing a graph genome constructed by "vg construct"
9 months ago by
Jordan M Eizenga
▴ 740
2
votes
1
reply
1.3k
views
Answer:
Answer: advice for visualizing a graph genome constructed by "vg construct"
9 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
429
views
Comment:
Comment: Simulating mRNA-seq data using VG - theoretical question
9 months ago by
Jordan M Eizenga
▴ 740
0
votes
0
replies
461
views
Comment:
Comment: compare vg stat scores
9 months ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
1.5k
views
Comment:
Comment: sequenceTubeMap input files
9 months ago by
Jordan M Eizenga
▴ 740
3
votes
1
reply
1.5k
views
Answer:
Answer: sequenceTubeMap input files
9 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
595
views
Comment:
Comment: vg giraffe handling of second vs. supplemental/split alignments, novel SVs, and
10 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
1.4k
views
Comment:
Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
10 months ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
1.4k
views
Comment:
Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
10 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
1.4k
views
Comment:
Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
11 months ago by
Jordan M Eizenga
▴ 740
1
vote
2
replies
976
views
Comment:
Comment: vg autoindex memory issues Signal 6 has occured
11 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
1.0k
views
Comment:
Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
11 months ago by
Jordan M Eizenga
▴ 740
0
votes
0
replies
437
views
Comment:
Comment: vg giraffe, accept admixed single and paired reads as input
11 months ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
1.0k
views
Comment:
Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
11 months ago by
Jordan M Eizenga
▴ 740
0
votes
0
replies
458
views
Comment:
Comment: Extracting haplotype-specific annotations from splicing graph
11 months ago by
Jordan M Eizenga
▴ 740
0
votes
0
replies
628
views
Comment:
Comment: Vg Call error multiple paths detected using HPRC-GRCH38 ref
11 months ago by
Jordan M Eizenga
▴ 740
0
votes
0
replies
536
views
Comment:
Comment: Help with VG Toolkit: VCF Output is Empty
12 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
1.3k
views
Comment:
Comment: Does vg call allow fuzzy match during SV calling?
14 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
1.3k
views
Comment:
Comment: Does vg call allow fuzzy match during SV calling?
14 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
1.3k
views
Comment:
Comment: Does vg call allow fuzzy match during SV calling?
14 months ago by
Jordan M Eizenga
▴ 740
1
vote
1
reply
1.3k
views
Answer:
Answer: Does vg call allow fuzzy match during SV calling?
14 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
705
views
Comment:
Comment: Distance index computation during `vg --autoindex` takes too long with one GFA f
15 months ago by
Jordan M Eizenga
▴ 740
0
votes
1
reply
708
views
Comment:
Comment: Problem with vg autoindex with phased VCF
15 months ago by
Jordan M Eizenga
▴ 740
0
votes
0
replies
637
views
Comment:
Comment: How to split alignment into smaller chunks with node range
15 months ago by
Jordan M Eizenga
▴ 740
1
vote
0
replies
931
views
Comment:
Comment: vg sim error: [insert_gbwt_path()] path name already exists:
16 months ago by
Jordan M Eizenga
▴ 740
0
votes
0
replies
1.7k
views
Comment:
Comment: vg: How to find node Position and source(sample) ?
16 months ago by
Jordan M Eizenga
▴ 740
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