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Answer: Answer: vg: transfer FASTQ comment to SAM tag a la `bwa mem -C`
9 days ago by Jordan M Eizenga ▴ 650
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243
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Comment: Comment: split gamp by chromosome or extract specific regions.
16 days ago by Jordan M Eizenga ▴ 650
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631
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Comment: Comment: vg autoindex memory issues Signal 6 has occured
16 days ago by Jordan M Eizenga ▴ 650
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0
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321
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Answer: Answer: fragment size estimation during vg mpmap and rpvg
16 days ago by Jordan M Eizenga ▴ 650
2
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312
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Answer: Answer: Does vg provides an api?
8 weeks ago by Jordan M Eizenga ▴ 650
1
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737
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Comment: Comment: question about Varias of graph format. How to get the sequence and source of a
3 months ago by Jordan M Eizenga ▴ 650
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0
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415
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Comment: Comment: VG - Verifying presence or absence of variants in Pangenome Graph
3 months ago by Jordan M Eizenga ▴ 650
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1
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415
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Answer: Answer: VG - Verifying presence or absence of variants in Pangenome Graph
3 months ago by Jordan M Eizenga ▴ 650
1
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0
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837
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Comment: Comment: sequenceTubeMap input files
3 months ago by Jordan M Eizenga ▴ 650
1
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1
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720
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Comment: Comment: advice for visualizing a graph genome constructed by "vg construct"
3 months ago by Jordan M Eizenga ▴ 650
0
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1
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837
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Comment: Comment: sequenceTubeMap input files
3 months ago by Jordan M Eizenga ▴ 650
0
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1
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837
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Comment: Comment: sequenceTubeMap input files
3 months ago by Jordan M Eizenga ▴ 650
1
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1
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837
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Comment: Comment: sequenceTubeMap input files
3 months ago by Jordan M Eizenga ▴ 650
0
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1
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720
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Comment: Comment: advice for visualizing a graph genome constructed by "vg construct"
3 months ago by Jordan M Eizenga ▴ 650
2
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1
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720
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Answer: Answer: advice for visualizing a graph genome constructed by "vg construct"
4 months ago by Jordan M Eizenga ▴ 650
1
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0
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263
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Comment: Comment: Simulating mRNA-seq data using VG - theoretical question
4 months ago by Jordan M Eizenga ▴ 650
0
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0
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289
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Comment: Comment: compare vg stat scores
4 months ago by Jordan M Eizenga ▴ 650
1
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1
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837
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Comment: Comment: sequenceTubeMap input files
4 months ago by Jordan M Eizenga ▴ 650
3
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1
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837
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Answer: Answer: sequenceTubeMap input files
4 months ago by Jordan M Eizenga ▴ 650
1
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0
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377
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Comment: Comment: vg giraffe handling of second vs. supplemental/split alignments, novel SVs, and
4 months ago by Jordan M Eizenga ▴ 650
0
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1
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1.0k
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Comment: Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
5 months ago by Jordan M Eizenga ▴ 650
1
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1
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1.0k
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Comment: Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
5 months ago by Jordan M Eizenga ▴ 650
0
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1
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1.0k
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Comment: Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
5 months ago by Jordan M Eizenga ▴ 650
1
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2
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631
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Comment: Comment: vg autoindex memory issues Signal 6 has occured
5 months ago by Jordan M Eizenga ▴ 650
0
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1
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598
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Comment: Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
5 months ago by Jordan M Eizenga ▴ 650
0
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0
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295
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Comment: Comment: vg giraffe, accept admixed single and paired reads as input
5 months ago by Jordan M Eizenga ▴ 650
1
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1
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598
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Comment: Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
5 months ago by Jordan M Eizenga ▴ 650
0
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0
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320
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Comment: Comment: Extracting haplotype-specific annotations from splicing graph
5 months ago by Jordan M Eizenga ▴ 650
0
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0
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379
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Comment: Comment: Vg Call error multiple paths detected using HPRC-GRCH38 ref
5 months ago by Jordan M Eizenga ▴ 650
0
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0
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371
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Comment: Comment: Help with VG Toolkit: VCF Output is Empty
6 months ago by Jordan M Eizenga ▴ 650
1
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0
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890
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
9 months ago by Jordan M Eizenga ▴ 650
0
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1
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890
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
9 months ago by Jordan M Eizenga ▴ 650
0
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1
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890
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
9 months ago by Jordan M Eizenga ▴ 650
1
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1
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890
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Answer: Answer: Does vg call allow fuzzy match during SV calling?
9 months ago by Jordan M Eizenga ▴ 650
1
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0
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479
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Comment: Comment: Distance index computation during `vg --autoindex` takes too long with one GFA f
9 months ago by Jordan M Eizenga ▴ 650
0
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1
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529
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Comment: Comment: Problem with vg autoindex with phased VCF
10 months ago by Jordan M Eizenga ▴ 650
0
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0
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488
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Comment: Comment: How to split alignment into smaller chunks with node range
10 months ago by Jordan M Eizenga ▴ 650
1
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0
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720
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Comment: Comment: vg sim error: [insert_gbwt_path()] path name already exists:
10 months ago by Jordan M Eizenga ▴ 650
0
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0
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1.2k
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Comment: Comment: vg: How to find node Position and source(sample) ?
11 months ago by Jordan M Eizenga ▴ 650
0
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0
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699
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Answer: Answer: The number of variations in the pan-genome is reduced compared to the variations
12 months ago by Jordan M Eizenga ▴ 650
1
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1
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1.2k
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Answer: Answer: How to find node Postion and source(sample) ?
12 months ago by Jordan M Eizenga ▴ 650
1
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0
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1.6k
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Comment: Comment: need interpretations for the vg call output
12 months ago by Jordan M Eizenga ▴ 650
1
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0
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1.0k
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Answer: Answer: Can I use vg tools to calculate the depth for a bed range file like with samtoo
13 months ago by Jordan M Eizenga ▴ 650
2
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1
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1.4k
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Answer: Answer: vg call - Selecting reference path to call on
13 months ago by Jordan M Eizenga ▴ 650
1
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0
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1.6k
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Answer: Answer: need interpretations for the vg call output
13 months ago by Jordan M Eizenga ▴ 650
0
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1
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1.1k
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Comment: Comment: Lack of correspondance of GFA node IDs to giraffe/call node IDs
13 months ago by Jordan M Eizenga ▴ 650
1
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0
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952
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Comment: Comment: Challenges in Variant Calling and Genotyping with Short-Read Data Mapped to a Pa
13 months ago by Jordan M Eizenga ▴ 650
0
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0
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624
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Answer: Answer: Interpretation question regarding vg call result vcf
13 months ago by Jordan M Eizenga ▴ 650
0
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0
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760
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Comment: Comment: HiFi read alignment with vg giraffe
13 months ago by Jordan M Eizenga ▴ 650
0
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0
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724
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Comment: Comment: Bug of vg surject
14 months ago by Jordan M Eizenga ▴ 650
121 results • Page 1 of 3
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