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Answer: Answer: Question about vg giraffe, vg surject and Visualization tool for mapping result
1 day ago by Jordan M Eizenga ▴ 740
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675
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Comment: Comment: Is vg toolkit suitable for haplotype calling?
15 days ago by Jordan M Eizenga ▴ 740
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675
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Comment: Comment: Is vg toolkit suitable for haplotype calling?
20 days ago by Jordan M Eizenga ▴ 740
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675
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Comment: Comment: Is vg toolkit suitable for haplotype calling?
21 days ago by Jordan M Eizenga ▴ 740
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675
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Answer: Answer: Is vg toolkit suitable for haplotype calling?
23 days ago by Jordan M Eizenga ▴ 740
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506
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Comment: Comment: What does vg autoindex mpmap do?
4 weeks ago by Jordan M Eizenga ▴ 740
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506
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Answer: Answer: What does vg autoindex mpmap do?
5 weeks ago by Jordan M Eizenga ▴ 740
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1
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378
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Answer: Answer: Annotate GFA with coverage depth
5 weeks ago by Jordan M Eizenga ▴ 740
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803
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Comment: Comment: vg mod changes a graph, but what about a gam or gamp to the original graph?
4 months ago by Jordan M Eizenga ▴ 740
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715
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Answer: Answer: Which pangenome graph (full/clip/filter/sampled) to use when align RNA-seq with
4 months ago by Jordan M Eizenga ▴ 740
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2
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803
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Comment: Comment: vg mod changes a graph, but what about a gam or gamp to the original graph?
5 months ago by Jordan M Eizenga ▴ 740
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455
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Answer: Answer: vg: transfer FASTQ comment to SAM tag a la `bwa mem -C`
5 months ago by Jordan M Eizenga ▴ 740
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395
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Comment: Comment: split gamp by chromosome or extract specific regions.
5 months ago by Jordan M Eizenga ▴ 740
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976
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Comment: Comment: vg autoindex memory issues Signal 6 has occured
5 months ago by Jordan M Eizenga ▴ 740
1
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507
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Answer: Answer: fragment size estimation during vg mpmap and rpvg
5 months ago by Jordan M Eizenga ▴ 740
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461
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Answer: Answer: Does vg provides an api?
7 months ago by Jordan M Eizenga ▴ 740
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1.0k
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Comment: Comment: question about Varias of graph format. How to get the sequence and source of a
8 months ago by Jordan M Eizenga ▴ 740
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719
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Comment: Comment: VG - Verifying presence or absence of variants in Pangenome Graph
8 months ago by Jordan M Eizenga ▴ 740
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1
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719
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Answer: Answer: VG - Verifying presence or absence of variants in Pangenome Graph
8 months ago by Jordan M Eizenga ▴ 740
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1.5k
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Comment: Comment: sequenceTubeMap input files
9 months ago by Jordan M Eizenga ▴ 740
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1.3k
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Comment: Comment: advice for visualizing a graph genome constructed by "vg construct"
9 months ago by Jordan M Eizenga ▴ 740
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1
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1.5k
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Comment: Comment: sequenceTubeMap input files
9 months ago by Jordan M Eizenga ▴ 740
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1
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1.5k
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Comment: Comment: sequenceTubeMap input files
9 months ago by Jordan M Eizenga ▴ 740
1
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1
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1.5k
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Comment: Comment: sequenceTubeMap input files
9 months ago by Jordan M Eizenga ▴ 740
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1
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1.3k
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Comment: Comment: advice for visualizing a graph genome constructed by "vg construct"
9 months ago by Jordan M Eizenga ▴ 740
2
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1
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1.3k
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Answer: Answer: advice for visualizing a graph genome constructed by "vg construct"
9 months ago by Jordan M Eizenga ▴ 740
1
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429
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Comment: Comment: Simulating mRNA-seq data using VG - theoretical question
9 months ago by Jordan M Eizenga ▴ 740
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461
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Comment: Comment: compare vg stat scores
9 months ago by Jordan M Eizenga ▴ 740
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1
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1.5k
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Comment: Comment: sequenceTubeMap input files
9 months ago by Jordan M Eizenga ▴ 740
3
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1
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1.5k
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Answer: Answer: sequenceTubeMap input files
9 months ago by Jordan M Eizenga ▴ 740
1
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0
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595
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Comment: Comment: vg giraffe handling of second vs. supplemental/split alignments, novel SVs, and
10 months ago by Jordan M Eizenga ▴ 740
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1
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1.4k
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Comment: Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
10 months ago by Jordan M Eizenga ▴ 740
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1
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1.4k
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Comment: Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
10 months ago by Jordan M Eizenga ▴ 740
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1
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1.4k
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Comment: Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
11 months ago by Jordan M Eizenga ▴ 740
1
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2
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976
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Comment: Comment: vg autoindex memory issues Signal 6 has occured
11 months ago by Jordan M Eizenga ▴ 740
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1
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1.0k
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Comment: Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
11 months ago by Jordan M Eizenga ▴ 740
0
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0
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437
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Comment: Comment: vg giraffe, accept admixed single and paired reads as input
11 months ago by Jordan M Eizenga ▴ 740
1
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1.0k
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Comment: Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
11 months ago by Jordan M Eizenga ▴ 740
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0
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458
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Comment: Comment: Extracting haplotype-specific annotations from splicing graph
11 months ago by Jordan M Eizenga ▴ 740
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0
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628
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Comment: Comment: Vg Call error multiple paths detected using HPRC-GRCH38 ref
11 months ago by Jordan M Eizenga ▴ 740
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0
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536
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Comment: Comment: Help with VG Toolkit: VCF Output is Empty
12 months ago by Jordan M Eizenga ▴ 740
1
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1.3k
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
14 months ago by Jordan M Eizenga ▴ 740
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1
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1.3k
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
14 months ago by Jordan M Eizenga ▴ 740
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1.3k
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
14 months ago by Jordan M Eizenga ▴ 740
1
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1
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1.3k
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Answer: Answer: Does vg call allow fuzzy match during SV calling?
14 months ago by Jordan M Eizenga ▴ 740
1
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0
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705
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Comment: Comment: Distance index computation during `vg --autoindex` takes too long with one GFA f
15 months ago by Jordan M Eizenga ▴ 740
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1
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708
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Comment: Comment: Problem with vg autoindex with phased VCF
15 months ago by Jordan M Eizenga ▴ 740
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0
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637
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Comment: Comment: How to split alignment into smaller chunks with node range
15 months ago by Jordan M Eizenga ▴ 740
1
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931
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Comment: Comment: vg sim error: [insert_gbwt_path()] path name already exists:
16 months ago by Jordan M Eizenga ▴ 740
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0
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1.7k
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Comment: Comment: vg: How to find node Position and source(sample) ?
16 months ago by Jordan M Eizenga ▴ 740
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