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1
vote
0
replies
465
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Comment:
Comment: Does vg call allow fuzzy match during SV calling?
6 weeks ago by
Jordan M Eizenga
▴ 460
0
votes
1
reply
465
views
Comment:
Comment: Does vg call allow fuzzy match during SV calling?
6 weeks ago by
Jordan M Eizenga
▴ 460
0
votes
1
reply
465
views
Comment:
Comment: Does vg call allow fuzzy match during SV calling?
6 weeks ago by
Jordan M Eizenga
▴ 460
1
vote
1
reply
465
views
Answer:
Answer: Does vg call allow fuzzy match during SV calling?
6 weeks ago by
Jordan M Eizenga
▴ 460
1
vote
0
replies
268
views
Comment:
Comment: Distance index computation during `vg --autoindex` takes too long with one GFA f
9 weeks ago by
Jordan M Eizenga
▴ 460
0
votes
1
reply
331
views
Comment:
Comment: Problem with vg autoindex with phased VCF
12 weeks ago by
Jordan M Eizenga
▴ 460
0
votes
0
replies
288
views
Comment:
Comment: How to split alignment into smaller chunks with node range
12 weeks ago by
Jordan M Eizenga
▴ 460
1
vote
0
replies
463
views
Comment:
Comment: vg sim error: [insert_gbwt_path()] path name already exists:
3 months ago by
Jordan M Eizenga
▴ 460
0
votes
0
replies
704
views
Comment:
Comment: vg: How to find node Position and source(sample) ?
3 months ago by
Jordan M Eizenga
▴ 460
0
votes
0
replies
545
views
Answer:
Answer: The number of variations in the pan-genome is reduced compared to the variations
4 months ago by
Jordan M Eizenga
▴ 460
1
vote
1
reply
704
views
Answer:
Answer: How to find node Postion and source(sample) ?
4 months ago by
Jordan M Eizenga
▴ 460
1
vote
0
replies
1.1k
views
Comment:
Comment: need interpretations for the vg call output
5 months ago by
Jordan M Eizenga
▴ 460
1
vote
0
replies
717
views
Answer:
Answer: Can I use vg tools to calculate the depth for a bed range file like with samtoo
5 months ago by
Jordan M Eizenga
▴ 460
1
vote
1
reply
912
views
Answer:
Answer: vg call - Selecting reference path to call on
5 months ago by
Jordan M Eizenga
▴ 460
1
vote
0
replies
1.1k
views
Answer:
Answer: need interpretations for the vg call output
5 months ago by
Jordan M Eizenga
▴ 460
0
votes
1
reply
756
views
Comment:
Comment: Lack of correspondance of GFA node IDs to giraffe/call node IDs
6 months ago by
Jordan M Eizenga
▴ 460
1
vote
0
replies
674
views
Comment:
Comment: Challenges in Variant Calling and Genotyping with Short-Read Data Mapped to a Pa
6 months ago by
Jordan M Eizenga
▴ 460
0
votes
0
replies
458
views
Answer:
Answer: Interpretation question regarding vg call result vcf
6 months ago by
Jordan M Eizenga
▴ 460
0
votes
0
replies
531
views
Comment:
Comment: HiFi read alignment with vg giraffe
6 months ago by
Jordan M Eizenga
▴ 460
0
votes
0
replies
516
views
Comment:
Comment: Bug of vg surject
6 months ago by
Jordan M Eizenga
▴ 460
0
votes
1
reply
516
views
Comment:
Comment: Bug of vg surject
6 months ago by
Jordan M Eizenga
▴ 460
0
votes
0
replies
423
views
Comment:
Comment: Identify parent of each read in a GAF
7 months ago by
Jordan M Eizenga
▴ 460
0
votes
0
replies
487
views
Comment:
Comment: vg rna pantranscriptome
7 months ago by
Jordan M Eizenga
▴ 460
0
votes
1
reply
1.4k
views
Comment:
Comment: VG mapping paired-end reads: error [xg]: multiple hits for XXX
7 months ago by
Jordan M Eizenga
▴ 460
0
votes
1
reply
2.3k
views
Comment:
Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
7 months ago by
Jordan M Eizenga
▴ 460
0
votes
1
reply
2.3k
views
Comment:
Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
7 months ago by
Jordan M Eizenga
▴ 460
0
votes
0
replies
2.3k
views
Comment:
Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
7 months ago by
Jordan M Eizenga
▴ 460
0
votes
2
replies
1.4k
views
Comment:
Comment: VG mapping paired-end reads: error [xg]: multiple hits for XXX
8 months ago by
Jordan M Eizenga
▴ 460
2
votes
1
reply
1.4k
views
Comment:
Comment: VG mapping paired-end reads: error [xg]: multiple hits for XXX
8 months ago by
Jordan M Eizenga
▴ 460
1
vote
1
reply
565
views
Comment:
Comment: VG node not present in graph
8 months ago by
Jordan M Eizenga
▴ 460
1
vote
0
replies
1.2k
views
Answer:
Answer: Is there a 1000GP pangenome available?
8 months ago by
Jordan M Eizenga
▴ 460
0
votes
2
replies
2.3k
views
Comment:
Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
8 months ago by
Jordan M Eizenga
▴ 460
0
votes
2
replies
2.3k
views
Comment:
Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
8 months ago by
Jordan M Eizenga
▴ 460
0
votes
1
reply
2.3k
views
Comment:
Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
8 months ago by
Jordan M Eizenga
▴ 460
0
votes
1
reply
2.3k
views
Comment:
Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
8 months ago by
Jordan M Eizenga
▴ 460
0
votes
1
reply
2.3k
views
Comment:
Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
8 months ago by
Jordan M Eizenga
▴ 460
0
votes
1
reply
2.3k
views
Comment:
Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
8 months ago by
Jordan M Eizenga
▴ 460
0
votes
1
reply
2.3k
views
Comment:
Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
8 months ago by
Jordan M Eizenga
▴ 460
2
votes
0
replies
1.2k
views
Comment:
Comment: How to identify which genome the variations in the pan-genome graph originate fr
8 months ago by
Jordan M Eizenga
▴ 460
0
votes
0
replies
787
views
Comment:
Comment: how to compare mapping of WES samples to human pangenome?
8 months ago by
Jordan M Eizenga
▴ 460
1
vote
2
replies
787
views
Comment:
Comment: how to compare mapping of WES samples to human pangenome?
8 months ago by
Jordan M Eizenga
▴ 460
1
vote
0
replies
1.2k
views
Comment:
Comment: How to identify which genome the variations in the pan-genome graph originate fr
8 months ago by
Jordan M Eizenga
▴ 460
1
vote
1
reply
1.4k
views
Comment:
Comment: VG Giraffe multi-mapped reads and definition for MAPQ score
8 months ago by
Jordan M Eizenga
▴ 460
1
vote
0
replies
2.4k
views
Comment:
Comment: SV calling using giraffe/vg
9 months ago by
Jordan M Eizenga
▴ 460
0
votes
2
replies
1.4k
views
Comment:
Comment: VG Giraffe multi-mapped reads and definition for MAPQ score
9 months ago by
Jordan M Eizenga
▴ 460
0
votes
0
replies
965
views
Comment:
Comment: vg map time consuming
9 months ago by
Jordan M Eizenga
▴ 460
0
votes
1
reply
840
views
Comment:
Comment: Substantial reduction in read mapping following VG surject
9 months ago by
Jordan M Eizenga
▴ 460
2
votes
1
reply
975
views
Answer:
Answer: Indexing the human pangenome draft
9 months ago by
Jordan M Eizenga
▴ 460
1
vote
0
replies
975
views
Comment:
Comment: Indexing the human pangenome draft
9 months ago by
Jordan M Eizenga
▴ 460
1
vote
0
replies
1.1k
views
Comment:
Comment: population-level stratagy of vg call
9 months ago by
Jordan M Eizenga
▴ 460
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