Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
all
1
vote
0
replies
570
views
Comment:
Comment: vg mod changes a graph, but what about a gam or gamp to the original graph?
7 weeks ago by
Jordan M Eizenga
▴ 690
1
vote
1
reply
492
views
Answer:
Answer: Which pangenome graph (full/clip/filter/sampled) to use when align RNA-seq with
7 weeks ago by
Jordan M Eizenga
▴ 690
0
votes
2
replies
570
views
Comment:
Comment: vg mod changes a graph, but what about a gam or gamp to the original graph?
9 weeks ago by
Jordan M Eizenga
▴ 690
1
vote
0
replies
376
views
Answer:
Answer: vg: transfer FASTQ comment to SAM tag a la `bwa mem -C`
11 weeks ago by
Jordan M Eizenga
▴ 690
1
vote
0
replies
310
views
Comment:
Comment: split gamp by chromosome or extract specific regions.
12 weeks ago by
Jordan M Eizenga
▴ 690
0
votes
0
replies
793
views
Comment:
Comment: vg autoindex memory issues Signal 6 has occured
12 weeks ago by
Jordan M Eizenga
▴ 690
1
vote
0
replies
409
views
Answer:
Answer: fragment size estimation during vg mpmap and rpvg
12 weeks ago by
Jordan M Eizenga
▴ 690
2
votes
0
replies
381
views
Answer:
Answer: Does vg provides an api?
4 months ago by
Jordan M Eizenga
▴ 690
1
vote
0
replies
841
views
Comment:
Comment: question about Varias of graph format. How to get the sequence and source of a
5 months ago by
Jordan M Eizenga
▴ 690
0
votes
0
replies
562
views
Comment:
Comment: VG - Verifying presence or absence of variants in Pangenome Graph
5 months ago by
Jordan M Eizenga
▴ 690
0
votes
1
reply
562
views
Answer:
Answer: VG - Verifying presence or absence of variants in Pangenome Graph
5 months ago by
Jordan M Eizenga
▴ 690
1
vote
0
replies
1.2k
views
Comment:
Comment: sequenceTubeMap input files
6 months ago by
Jordan M Eizenga
▴ 690
1
vote
1
reply
967
views
Comment:
Comment: advice for visualizing a graph genome constructed by "vg construct"
6 months ago by
Jordan M Eizenga
▴ 690
0
votes
1
reply
1.2k
views
Comment:
Comment: sequenceTubeMap input files
6 months ago by
Jordan M Eizenga
▴ 690
0
votes
1
reply
1.2k
views
Comment:
Comment: sequenceTubeMap input files
6 months ago by
Jordan M Eizenga
▴ 690
1
vote
1
reply
1.2k
views
Comment:
Comment: sequenceTubeMap input files
6 months ago by
Jordan M Eizenga
▴ 690
0
votes
1
reply
967
views
Comment:
Comment: advice for visualizing a graph genome constructed by "vg construct"
6 months ago by
Jordan M Eizenga
▴ 690
2
votes
1
reply
967
views
Answer:
Answer: advice for visualizing a graph genome constructed by "vg construct"
6 months ago by
Jordan M Eizenga
▴ 690
1
vote
0
replies
343
views
Comment:
Comment: Simulating mRNA-seq data using VG - theoretical question
6 months ago by
Jordan M Eizenga
▴ 690
0
votes
0
replies
364
views
Comment:
Comment: compare vg stat scores
6 months ago by
Jordan M Eizenga
▴ 690
1
vote
1
reply
1.2k
views
Comment:
Comment: sequenceTubeMap input files
6 months ago by
Jordan M Eizenga
▴ 690
3
votes
1
reply
1.2k
views
Answer:
Answer: sequenceTubeMap input files
6 months ago by
Jordan M Eizenga
▴ 690
1
vote
0
replies
493
views
Comment:
Comment: vg giraffe handling of second vs. supplemental/split alignments, novel SVs, and
7 months ago by
Jordan M Eizenga
▴ 690
0
votes
1
reply
1.2k
views
Comment:
Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
7 months ago by
Jordan M Eizenga
▴ 690
1
vote
1
reply
1.2k
views
Comment:
Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
7 months ago by
Jordan M Eizenga
▴ 690
0
votes
1
reply
1.2k
views
Comment:
Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
7 months ago by
Jordan M Eizenga
▴ 690
1
vote
2
replies
793
views
Comment:
Comment: vg autoindex memory issues Signal 6 has occured
7 months ago by
Jordan M Eizenga
▴ 690
0
votes
1
reply
797
views
Comment:
Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
8 months ago by
Jordan M Eizenga
▴ 690
0
votes
0
replies
367
views
Comment:
Comment: vg giraffe, accept admixed single and paired reads as input
8 months ago by
Jordan M Eizenga
▴ 690
1
vote
1
reply
797
views
Comment:
Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
8 months ago by
Jordan M Eizenga
▴ 690
0
votes
0
replies
382
views
Comment:
Comment: Extracting haplotype-specific annotations from splicing graph
8 months ago by
Jordan M Eizenga
▴ 690
0
votes
0
replies
496
views
Comment:
Comment: Vg Call error multiple paths detected using HPRC-GRCH38 ref
8 months ago by
Jordan M Eizenga
▴ 690
0
votes
0
replies
435
views
Comment:
Comment: Help with VG Toolkit: VCF Output is Empty
9 months ago by
Jordan M Eizenga
▴ 690
1
vote
0
replies
1.1k
views
Comment:
Comment: Does vg call allow fuzzy match during SV calling?
11 months ago by
Jordan M Eizenga
▴ 690
0
votes
1
reply
1.1k
views
Comment:
Comment: Does vg call allow fuzzy match during SV calling?
11 months ago by
Jordan M Eizenga
▴ 690
0
votes
1
reply
1.1k
views
Comment:
Comment: Does vg call allow fuzzy match during SV calling?
11 months ago by
Jordan M Eizenga
▴ 690
1
vote
1
reply
1.1k
views
Answer:
Answer: Does vg call allow fuzzy match during SV calling?
11 months ago by
Jordan M Eizenga
▴ 690
1
vote
0
replies
545
views
Comment:
Comment: Distance index computation during `vg --autoindex` takes too long with one GFA f
12 months ago by
Jordan M Eizenga
▴ 690
0
votes
1
reply
619
views
Comment:
Comment: Problem with vg autoindex with phased VCF
12 months ago by
Jordan M Eizenga
▴ 690
0
votes
0
replies
556
views
Comment:
Comment: How to split alignment into smaller chunks with node range
12 months ago by
Jordan M Eizenga
▴ 690
1
vote
0
replies
815
views
Comment:
Comment: vg sim error: [insert_gbwt_path()] path name already exists:
13 months ago by
Jordan M Eizenga
▴ 690
0
votes
0
replies
1.4k
views
Comment:
Comment: vg: How to find node Position and source(sample) ?
13 months ago by
Jordan M Eizenga
▴ 690
0
votes
0
replies
742
views
Answer:
Answer: The number of variations in the pan-genome is reduced compared to the variations
14 months ago by
Jordan M Eizenga
▴ 690
1
vote
1
reply
1.4k
views
Answer:
Answer: How to find node Postion and source(sample) ?
14 months ago by
Jordan M Eizenga
▴ 690
1
vote
0
replies
1.9k
views
Comment:
Comment: need interpretations for the vg call output
15 months ago by
Jordan M Eizenga
▴ 690
1
vote
0
replies
1.1k
views
Answer:
Answer: Can I use vg tools to calculate the depth for a bed range file like with samtoo
15 months ago by
Jordan M Eizenga
▴ 690
2
votes
1
reply
1.6k
views
Answer:
Answer: vg call - Selecting reference path to call on
15 months ago by
Jordan M Eizenga
▴ 690
1
vote
0
replies
1.9k
views
Answer:
Answer: need interpretations for the vg call output
15 months ago by
Jordan M Eizenga
▴ 690
0
votes
1
reply
1.3k
views
Comment:
Comment: Lack of correspondance of GFA node IDs to giraffe/call node IDs
16 months ago by
Jordan M Eizenga
▴ 690
1
vote
0
replies
1.1k
views
Comment:
Comment: Challenges in Variant Calling and Genotyping with Short-Read Data Mapped to a Pa
16 months ago by
Jordan M Eizenga
▴ 690
124 results • Page
1 of 3
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6