User: meowz

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meowz40
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2 weeks, 1 day ago
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Posts by meowz

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Comment: C: Spades vs Velvelt_why do I get much more contigs with SPADEs?
... You could try --careful option while running the SPADEs, It may reduce the number of mismatches and short indels. ...
written 4 weeks ago by meowz40
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Answer: A: how to de novo assemble a large number of bacterial genome with spades in Linux
... You can do it with the help of shell #!/bin/bash for fol in "your fastq directory" ; do echo $fol for i in `ls $fol | tr "_" "\t" | cut -f4 | sort | uniq`; do fitag=`ls $fol | grep $i | head -n1 | sed -e 's/L/\t/g' | cut -f1` spades.py --pe1-1 $fol$fitag$i"_R1.fastq.gz" - ...
written 4 weeks ago by meowz40
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Comment: C: how to de novo assemble a large number of bacterial genome with spades in Linux
... You can do it with the help of shell ...
written 4 weeks ago by meowz40
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Count unique (pairwise) one and save as a matrix
... Hi all, I have a file like this group1 group2 group3 group4 ax as we aw as we rt ty aw aq yu pl aq qw oo se I need to count unique (pairwise) one and save as a matrix form like this group1 ...
R written 12 weeks ago by meowz40 • updated 12 weeks ago by zx87549.0k
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Comment: C: Clustering of DAVID gene enrichment results from gene expression studies
... Hello Kevin Blighe, I have one question. I did Functional Annotation Clustering and i got 100 clusters. But on the annotation results Ensemble ID is coming . Is there any way to replace those ensemble ID to gene name from functional annotation clustering output ...
written 5 months ago by meowz40

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Teacher 4 weeks ago, created an answer with at least 3 up-votes. For A: how to de novo assemble a large number of bacterial genome with spades in Linux

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