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Posts by a.j.wilson0000
... I'm fairly certain it's all been sorted on the lab side. We have new TWIST mito probes custom tailored to the rCRF that can pull out chrM piecemeal without disrupting the standard WES process. Auto filtering of amplified NuMTs is apparently done with FilterMutectCalls along with the default setting ...
... Hey all. Currently working on a project to do mitochondrial variant calling on whole exome data. Our probes are about 120 bp and are setup to capture the entirety of the chrM contig at extremely high depth. We're currently looking at a few different tools, and the new GATK best practices MUTECT2 m ...
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