User: biohacker_tobe

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2 months, 1 week ago
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1 year, 4 months ago
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Posts by biohacker_tobe

<prev • 63 results • page 2 of 7 • next >
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Comment: C: Downloading Proteomic Data (FTP FIles)
... For some reason I am not able to,. That's really strange... ...
written 4 months ago by biohacker_tobe40
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Downloading Proteomic Data (FTP Files)
... I'm trying to download protein information associated to specific melting temperatures, but am not successfull downloading the ftp files from the Proteomics Identification Database (PRIDE). I was wondering if anyone has tried doing this in the past. Below is the link to the data I am trying to acc ...
proteomics sequence written 4 months ago by biohacker_tobe40
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Comment: C: Using Levenshtein Distances to determine predictions using kNN Regression
... Sorry about that @pierre, I will remove it from this community. I considered them to be two completely different forums. ...
written 6 months ago by biohacker_tobe40
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Comment: C: Using Levenshtein Distances to determine predictions using kNN Regression
... Hey Jean, it's mostly I want to know how I would actually be able to apply the KNN regression to this type of problem an if possible. ...
written 6 months ago by biohacker_tobe40
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Comment: C: Add Annotations as sidecolors in Heatmap
... hey! this unfortunately does not allow me to map back my annotated gene clusters ...
written 9 months ago by biohacker_tobe40
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Add Annotations as sidecolors in Heatmap
... I have two seperate dataframes, from one of these I have already created a heatmap from the first dataframe, however I want to add a sidebar that indicates the type of family that a gene is actually associated to it. #Dataframe 1 BGC1 BGC2 Distance --------------------------------- ...
R ggplot2 written 9 months ago by biohacker_tobe40
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Phylogenetic Tree Annotations
... I am interested in putting lines between my dots on my tree to fill in the empty spaces, as I have done in the center. However, I am not able to do this with the web tool iTOL. I don't know if this is even possible. Each dot is representing a gene cluster. ![enter image description here][1] [1] ...
itol phylogeny trees written 9 months ago by biohacker_tobe40
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Co-Occurrence Heatmap Creation
... Would it be possible to create a heatmap that will visualize the co-occurrence type among Gene Clusters pairs (X1 and X2 values from data frame). I have already created a first analysis using networks. I want to possibly have this heatmap with their respective association types. From my dataframe I ...
R heatmap ggplot2 statistics written 9 months ago by biohacker_tobe40
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observed frequency vs expected frequency plot interpretation
... I'm trying to understand the output of a plot that considers the observed frequency and expected frequency. More or less I've thought that plotting the observed values against the expected values will inspect the degree to which pairs deviate from their expected co-occurrence frequency. Here we can ...
genome biostatistics written 9 months ago by biohacker_tobe40
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Co-Occurr Package (ggplot2 adjustments)
... Ive' been using the R package "cooccur" to measure co-occurrence among bird species, a package that produces its own R objects. I am not very familiar on this and want to make changes to the sizes of its x and y labels. I'm trying to adjust the size of the font of the plot but using theme(), I've b ...
R ggplot cooccur written 9 months ago by biohacker_tobe40 • updated 9 months ago by ATpoint44k

Latest awards to biohacker_tobe

Popular Question 11 weeks ago, created a question with more than 1,000 views. For Co-Occurrence Network Graph & Statistics
Supporter 4 months ago, voted at least 25 times.

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