User: biohacker_tobe
biohacker_tobe • 40
- Reputation:
- 40
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- Last seen:
- 2 months, 1 week ago
- Joined:
- 1 year, 4 months ago
- Email:
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... For some reason I am not able to,. That's really strange... ...
written 4 months ago by
biohacker_tobe • 40
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... I'm trying to download protein information associated to specific melting temperatures, but am not successfull downloading the ftp files from the Proteomics Identification Database (PRIDE). I was wondering if anyone has tried doing this in the past.
Below is the link to the data I am trying to acc ...
written 4 months ago by
biohacker_tobe • 40
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... Sorry about that @pierre, I will remove it from this community. I considered them to be two completely different forums. ...
written 6 months ago by
biohacker_tobe • 40
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... Hey Jean, it's mostly I want to know how I would actually be able to apply the KNN regression to this type of problem an if possible. ...
written 6 months ago by
biohacker_tobe • 40
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... hey! this unfortunately does not allow me to map back my annotated gene clusters ...
written 9 months ago by
biohacker_tobe • 40
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... I have two seperate dataframes, from one of these I have already created a heatmap from the first dataframe, however I want to add a sidebar that indicates the type of family that a gene is actually associated to it.
#Dataframe 1
BGC1 BGC2 Distance
--------------------------------- ...
written 9 months ago by
biohacker_tobe • 40
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... I am interested in putting lines between my dots on my tree to fill in the empty spaces, as I have done in the center. However, I am not able to do this with the web tool iTOL. I don't know if this is even possible. Each dot is representing a gene cluster.
![enter image description here][1]
[1] ...
written 9 months ago by
biohacker_tobe • 40
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... Would it be possible to create a heatmap that will visualize the co-occurrence type among Gene Clusters pairs (X1 and X2 values from data frame).
I have already created a first analysis using networks. I want to possibly have this heatmap with their respective association types. From my dataframe I ...
written 9 months ago by
biohacker_tobe • 40
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... I'm trying to understand the output of a plot that considers the observed frequency and expected frequency. More or less I've thought that plotting the observed values against the expected values will inspect the degree to which pairs deviate from their expected co-occurrence frequency.
Here we can ...
written 9 months ago by
biohacker_tobe • 40
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... Ive' been using the R package "cooccur" to measure co-occurrence among bird species, a package that produces its own R objects. I am not very familiar on this and want to make changes to the sizes of its x and y labels.
I'm trying to adjust the size of the font of the plot but using theme(), I've b ...
written 9 months ago by
biohacker_tobe • 40
• updated
9 months ago by
ATpoint ♦ 44k
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