User: thequokka

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thequokka0
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Posts by thequokka

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Comment: C: How can I use BBMap reformat.sh to correctly retrieve fastq quality scores from
... Ok. Thanks genomax. Submitted a ticket to Brian. Strange that the extra command options cause a problem for you. The extra hyphen is there due to piping in from seqtk mergepe/STDOUT . ...
written 10 days ago by thequokka0
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Comment: C: How can I use BBMap reformat.sh to correctly retrieve fastq quality scores from
... I tried your suggestions but am still getting the same results. Things work fine for bam/sam files with q+33 quality scores but not for q+64 scores. Basically I believe this is a bug. java --version output: openjdk 12.0.1 2019-04-16 OpenJDK Runtime Environment (build 12.0.1+12) OpenJDK ...
written 11 days ago by thequokka0
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How can I use BBMap reformat.sh to correctly retrieve fastq quality scores from a bam file?
... Hi, I'm trying to use BBMap version 38.08 to retrieve fastq sequences from a bam file. However, I keep getting a problem where the quality output is merely: JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ Here's some lin ...
software error reformat.sh quality bam bbmap written 25 days ago by thequokka0

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