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Posts by mrs.whirly
... Hello, I am trying to align my raw sequencing data using bowtie2. This is for ATAC-seq analysis. What are the best commands settings to use on bowtie for that? I know I want paired-end alignments and local sequencing, but I am not sure what other options are good for ATAC-seq, such not including d ...
... Hello everyone, I am analyzing ATAC-seq data to identify enhancers. This is my first time doing this particular analysis. I am using Bowtie2 to align the raw sequencing data. I used their default settings for paired-end reads. I have two questions: 1. Does anyones know what the default distance i ...
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