User: mrmrwinter
mrmrwinter • 30
- Reputation:
- 30
- Status:
- New User
- Location:
- University of Hull
- Website:
- https://github.com/mrm...
- Twitter:
- @mrmrwinter
- Last seen:
- 2 months, 4 weeks ago
- Joined:
- 1 year, 5 months ago
- Email:
- m*********@gmail.com
Posts by mrmrwinter
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Comment:
C: Combining nanopore libraries
... Awesome, thanks. This is exactly what i needed ...
written 3 months ago by
mrmrwinter • 30
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... Hi
I have two PromethION libraries, one standard, and the other with ultralong read chemistry.
To create a draft assembly i pooled the fastqs of both libraries and assembled from the result.
Now i am coming to nanopolishing the assembly and it requires the fast5 signal files of reads used in the ...
written 3 months ago by
mrmrwinter • 30
• updated
3 months ago by
colindaven • 2.6k
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... Thanks all. I'm going with IGV ...
written 3 months ago by
mrmrwinter • 30
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... What in your opinion are the bet open source genome browsers available now?
I have used several including JBrowse, Genome Workbench, and Artemis, but find them all clunky and their GUIs dated.
Genious looks very good, but its licence requirement limits distribution of results and outputs, and is r ...
written 3 months ago by
mrmrwinter • 30
• updated
11 weeks ago by
Carlo Yague ♦ 5.7k
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... Hi
I am trying to plot several trees in toytree but it is returning an error.
`Unexpected newick format 100/48.8/63.1:0.0045539444`
The tree was made in IQTREE using the -gcf and -scf commands to calculate and apply concordance factors as support values.
I have checked the documentation of iqtre ...
written 6 months ago by
mrmrwinter • 30
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... Hi,
I have a snakemake workflow that contains a small section with several shell command rules and external python script rules.
The rules iterate over a wildcard, {OG}, which is created at the beginning of the workflow.
At each rule, some of the wildcards will fail. The successful ones should be ...
written 7 months ago by
mrmrwinter • 30
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... Yes automatically using a package.
I have a .csv, of which one column is a list of species names, another is a list of family names etc. I want to add a column that has the Order of each of these entries.
Ive done some molecular taxonomic assignment before, so i know these things are possible, but ...
written 9 months ago by
mrmrwinter • 30
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... I have a .csv with various anatomical measurements of animals. Each of these entries also has family/genus/species level classification.
I want some way to assign Order to each of these entries, within R.
Is there a package for this in R? Or am i going to have to do it in python etc?
Thanks ...
written 9 months ago by
mrmrwinter • 30
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... I'm installing JBrowse as i type
Thanks again Juke ...
written 11 months ago by
mrmrwinter • 30
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... Does overtraining result in fewer predictions then?
Does this mean i should take the results of an earlier iteration? One nearer what would be expected? ...
written 11 months ago by
mrmrwinter • 30
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