User: mrmrwinter

gravatar for mrmrwinter
mrmrwinter30
Reputation:
30
Status:
New User
Location:
University of Hull
Website:
https://github.com/mrm...
Twitter:
@mrmrwinter
Last seen:
3 months ago
Joined:
1 year, 5 months ago
Email:
m*********@gmail.com

Posts by mrmrwinter

<prev • 32 results • page 3 of 4 • next >
0
votes
1
answer
679
views
1
answers
Comment: C: Counting CDS's in Maker output
... Yes i got this file and folder the wall of text above is the contents of `maker-annotation_stats.txt` No, i didnt do anything thing else other than `gaas_maker_merge_outputs_from_datastore.pl` ...
written 12 months ago by mrmrwinter30
0
votes
1
answer
679
views
1
answers
Comment: C: Counting CDS's in Maker output
... Hi, ive ran what you siggested but do not understand the output. Which of these statistics is CDS's? Thanks Number of matchs 259209 Number of protein_matchs 136451 Number of introns 928478 Number of match_parts ...
written 12 months ago by mrmrwinter30
0
votes
1
answer
679
views
1
answers
Comment: C: Counting CDS's in Maker output
... Thanks Juke, this is exactly what i needed ...
written 12 months ago by mrmrwinter30
5
votes
1
answer
679
views
1
answer
Counting CDS's in Maker output
... Hi I have just ran Maker to annotate my genome. where/how can i find how many CDS's it detected? I have tried running into JBrowse with maker2jbrowse, but i cannot open the output in browser. Thanks ...
annotation gene prediction maker est cds written 12 months ago by mrmrwinter30 • updated 12 months ago by Juke345.1k
0
votes
1
answer
212
views
1
answers
Comment: C: If/Else loop for grep count
... Will do in future, sorry ...
written 12 months ago by mrmrwinter30
1
vote
1
answer
212
views
1
answer
If/Else loop for grep count
... Im trying to write an if-else loop that does the following grep -c ^">" If results of grep are >0, move file to location1 Else move file to location 2 So far i have: def numfasta = grep -c ^'>' {input} if [[ $numfasta -gt 0 ]] ; then mv {input} {output.denoise} ...
python grep if else snakemake written 12 months ago by mrmrwinter30 • updated 12 months ago by Pierre Lindenbaum134k
0
votes
1
answer
205
views
1
answers
Comment: C: How to omit certain results from GenBank search?
... Brilliant, thankyou! I tried "not", just not in capitals. Thanks. ...
written 12 months ago by mrmrwinter30
3
votes
2
answers
211
views
2
answers
Which format to download ESTs for annotation with MAKER?
... Which format do i need to download ESTs in from GenBank? Do i need the Complete Features? Or just the Sequence? Or even just the gene information? This is to run into MAKER so needs to be in FASTA Many thanks. ...
genome annotation gene prediction written 12 months ago by mrmrwinter30 • updated 12 months ago by Juke345.1k
1
vote
1
answer
205
views
1
answer
How to omit certain results from GenBank search?
... I am trying to download all proteins from a species on GenBank but i dont want mitochondrial proteins in my database. Is there a way to omit them from the search results? Or will i have to remove them from the seq file after downloading? Thanks ...
omission database protein genbank annotation written 12 months ago by mrmrwinter30
0
votes
0
answers
3.5k
views
0
answers
Comment: C: remote blast requires installation of taxdb database
... Did you have any luck with this? Thanks ...
written 17 months ago by mrmrwinter30

Latest awards to mrmrwinter

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2215 users visited in the last hour
_