User: shraimrawan

shraimrawan • 0

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Posts by shraimrawan

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Burden Test for whole exome sequencing data running into errors

... Hi, I am trying to run a burden test on vcf files using PLINK SEQ. When running the program, I run into the error when trying to get the gene based associations. My code is posted below, and the error is posted below. Any help would be appreciated. I ran gatk on my vcf file to filter out low qua ...

burdentest plinkseq sequencing written 7 months ago by shraimrawan • 0 • updated 7 months ago by RamRS ♦ 27k

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248

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bcftools -trim-alt-alleles errors

... Hi, I am trying to trim alternate alleles in my vcf file. I keep getting the following error. This is the command I am using to trim my file. I am new to this so any help would be appreciated. bcftools view --trim-alt-alleles veo.remicade.selvar.vcf > veo.remicade.selvarv3.vcf [E ...

exome vcf bcftools sequencing written 8 months ago by shraimrawan • 0 • updated 6 months ago by Biostar ♦♦ 20

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