User: Flies
Flies • 100
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Posts by Flies
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Comment:
C: Bioinformatics Question
... worst question evar. ...
written 8.0 years ago by
Flies • 100
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... Don't you worry about under-representing similar genes (e.g. from gene duplication) when you require unique-mapped reads? ...
written 8.0 years ago by
Flies • 100
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... As to the reason why, it's because I have a quantitative model that uses DNA sequence as input, and I want to do the calculation as efficiently as possible. ...
written 8.0 years ago by
Flies • 100
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... As to the reason why, it's because I have a quantitative model that uses DNA sequence as input. ...
written 8.0 years ago by
Flies • 100
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... @qdjm I'm just guessing that I'm not the first person to do this, and I'm wondering what solutions people have come up with. I mention my current idea as a point of reference. ...
written 8.0 years ago by
Flies • 100
3
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5 follow
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... I'm going to be doing some non-linear regression (with a huge and messy residual function), and I am thinking of using PDL::Fit::LM (I had some trouble getting Levmar to install).
The explanatory variables for my fit are DNA sequence (which I'm feeding into a position-specific weight-matrix). What ...
written 8.0 years ago by
Flies • 100
• updated
8.0 years ago by
Dr. Mabuse ♦ 47k
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... i suppose... although I shouldn't like to think that that kind of error would account for such a large percentage of mapped tags. I'm going to do a test and see exactly what percentage of tags come from multiply-mapped genes... ...
written 8.1 years ago by
Flies • 100
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... I don't think alternative transcripts are enough to solve the problem. According to an Ensembl.org genbank file I'm looking at, one of the genes with 3 different tags has only two different transcripts. ...
written 8.1 years ago by
Flies • 100
2
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1.5k
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... I'm looking at some SAGE data, and I'm finding that 50% of all genes tagged have multiple distinct tags corresponding to them. For instance, a certain gene is tagged by 485 gtgcggacattgcaagc tags, and 7 gtgtgtacattgcaagt tags. 4% of genes have at least 5 tags associated with them!
My understandin ...
1
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15
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42k
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15
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... wouldn't it be better to say if (! exists $headers{})? ...
written 8.4 years ago by
Flies • 100
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