User: Njagi Mwaniki
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Posts by Njagi Mwaniki
Comment: C: No output from vg msga
... I gave up on that dataset and tried it on the one I thought would work (in edit 2) which is 14G of reads. That failed with "error:[gssw] Could not allocate memory required for alignment traceback matrixes." I'm now going to try it on reads about 7MB in size and get back to you. Also what if I wante ...
... I have long read data in a fasta file (that I got from converting BAM to fasta) that I'm trying to build a graph out of using the instructions here https://github.com/vgteam/vg/wiki/Long-read-assemblies-using-vg-msga#long-read-assembly. One thing that could be the issue is that, my reads have > ...
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