User: Njagi Mwaniki

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Posts by Njagi Mwaniki

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VG `make deps` fails to compile vcflib on mac
... I'm having trouble compiling vg on macOS Catalina 10.15.6. I followed the build instructions in the README and even looked at the Travis config for macOS but couldn't figure it out. Looks to me like the linker can't find vcflib, here's the error https://gist.github.com/urbanslug/e20844b1ad9f45c8217 ...
vg written 3 months ago by Njagi Mwaniki0
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Comment: C: No output from vg msga
... I gave up on that dataset and tried it on the one I thought would work (in edit 2) which is 14G of reads. That failed with "error:[gssw] Could not allocate memory required for alignment traceback matrixes." I'm now going to try it on reads about 7MB in size and get back to you. Also what if I wante ...
written 13 months ago by Njagi Mwaniki0
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No output from vg msga
... I have long read data in a fasta file (that I got from converting BAM to fasta) that I'm trying to build a graph out of using the instructions here https://github.com/vgteam/vg/wiki/Long-read-assemblies-using-vg-msga#long-read-assembly. One thing that could be the issue is that, my reads have > ...
vg written 13 months ago by Njagi Mwaniki0

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