User: kumar.vinod81
kumar.vinod81 • 280
- Reputation:
- 280
- Status:
- Trusted
- Location:
- New Delhi
- Last seen:
- 2 months, 2 weeks ago
- Joined:
- 6 years ago
- Email:
- k************@gmail.com
I am M.Sc., Ph.D. in plant biotechnology
Posts by kumar.vinod81
<prev
• 101 results •
page 1 of 11 •
next >
0
votes
1
answer
190
views
1
answers
Answer:
A: recode SNPs ATGC illumina
... Export file in PLINK format and you will find a lot of options in PLINK for genotypes recoding. ...
written 10 weeks ago by
kumar.vinod81 • 280
0
votes
0
answers
73
views
0
answers
... I am using non-additive functions implemented in GenABEL. VIFGC function for dominant and recessive non-additive model is working fine but with the same data, VIFGC_ovedom function is giving an error:
Error: Error in nlm(GC_VIF_nlm, c(F = F1, K = K1)) : missing value in parameter
Also, how to calcu ...
written 11 weeks ago by
kumar.vinod81 • 280
1
vote
0
answers
750
views
0
answers
... Could anybody suggest me about the literature on Simulation in quantitative genetics and gwas ? I am a wet lab student and not much aware with this term but I've listen this word so many time and in so many research papers as I am working on GWAS but I am not able to find papers regarding its real m ...
written 2.3 years ago by
kumar.vinod81 • 280
1
vote
0
answers
808
views
0
answers
... ![enter image description here][1]Can I generate a boxplot like the one attached in image ?
I just know simple one.
boxplot(phenotype~SNP1:SNP2)
![boxplot like this][1]
[1]: https://s26.postimg.org/447qeuhm1/boxplot.jpg ...
written 2.3 years ago by
kumar.vinod81 • 280
0
votes
0
answers
976
views
0
answers
... I have generated haplotype block of a chromosomal region and used it for hap association of quantitative trait in plink. I am ok with R2 and P-val but not with regression coeffecient and t statistics. I am getting two haplotype significantly associated but one with positive and one with negative Reg ...
written 2.4 years ago by
kumar.vinod81 • 280
0
votes
1
answer
1.3k
views
1
answers
... Thanks Floris,
But I am not able to use --blocks output as myfile.hlist as both are quite different. Do you have any idea?
thanks for your help ...
written 2.5 years ago by
kumar.vinod81 • 280
0
votes
1
answer
1.3k
views
1
answer
... I have a done a GWAS study in plant for quantitative trait and found some regions higly significant. Now, I want to see the haplotye structure around these SNPs and their reassociation with the trait so, I can capture the contributing haplotype. Does anyone know any tool which can make it possible?
...
written 2.5 years ago by
kumar.vinod81 • 280
• updated
2.5 years ago by
Floris Brenk • 850
0
votes
0
answers
1.4k
views
0
answers
... I want to transpose excel data containing 50000 rows and 171 columns but as in excel we dont have many columns so this transpose is not possible. Can I get a transposed notepad or text file of this dataset? Thanks,
...
written 2.5 years ago by
kumar.vinod81 • 280
1
vote
1
answer
1.2k
views
1
answers
... Try this for GUI....very good
http://www.hiv.lanl.gov/content/sequence/HEATMAP/heatmap_mainpage.html
...
written 2.9 years ago by
kumar.vinod81 • 280
0
votes
1
answer
803
views
1
answer
... Doest anybody know that academic license for fastPHASE is desabled for research use? Whean I am going to their website, license disabled is written? Does it transeffered somewhere else?
Thanks,
...
written 3.0 years ago by
kumar.vinod81 • 280
• updated
3.0 years ago by
cpad0112 • 9.0k
Latest awards to kumar.vinod81
Popular Question
6 months ago,
created a question with more than 1,000 views.
For Snp Information From Ped File In Plink
Popular Question
6 months ago,
created a question with more than 1,000 views.
For haplotype association with quantitative traits
Great Question
11 months ago,
created a question with more than 5,000 views.
For Phenotypic Variation Explained By Snps In Gwas
Popular Question
11 months ago,
created a question with more than 1,000 views.
For Snp Information From Ped File In Plink
Popular Question
11 months ago,
created a question with more than 1,000 views.
For Transpose large excel data containing thousands of rows
Popular Question
11 months ago,
created a question with more than 1,000 views.
For fastPHASE output format to PLINK input format
Popular Question
11 months ago,
created a question with more than 1,000 views.
For Best Tutorial For Missing Value Imputation Of Genotype File For Gwas Especially In Plants...
Popular Question
11 months ago,
created a question with more than 1,000 views.
For Association Mapping: Can Mlm Find More Association Than Glm?
Popular Question
11 months ago,
created a question with more than 1,000 views.
For What Is Haplotyping In Context Of Gwas?
Popular Question
11 months ago,
created a question with more than 1,000 views.
For Need Recommendation On Good Tutorials For Performing Gwas
Popular Question
13 months ago,
created a question with more than 1,000 views.
For Snp Information From Ped File In Plink
Popular Question
13 months ago,
created a question with more than 1,000 views.
For Association Mapping: Can Mlm Find More Association Than Glm?
Popular Question
13 months ago,
created a question with more than 1,000 views.
For fastPHASE output format to PLINK input format
Popular Question
13 months ago,
created a question with more than 1,000 views.
For Need Recommendation On Good Tutorials For Performing Gwas
Popular Question
22 months ago,
created a question with more than 1,000 views.
For Snp Information From Ped File In Plink
Popular Question
2.1 years ago,
created a question with more than 1,000 views.
For Snp Information From Ped File In Plink
Appreciated
2.2 years ago,
created a post with more than 5 votes.
For Need Recommendation On Good Tutorials For Performing Gwas
Popular Question
2.2 years ago,
created a question with more than 1,000 views.
For Snp Information From Ped File In Plink
Popular Question
2.3 years ago,
created a question with more than 1,000 views.
For Snp Information From Ped File In Plink
Popular Question
2.4 years ago,
created a question with more than 1,000 views.
For Snp Information From Ped File In Plink
Centurion
2.5 years ago,
created 100 posts.
Popular Question
2.5 years ago,
created a question with more than 1,000 views.
For Does Imputation Always Need Reference Panel
Popular Question
2.6 years ago,
created a question with more than 1,000 views.
For Need Recommendation On Good Tutorials For Performing Gwas
Popular Question
2.8 years ago,
created a question with more than 1,000 views.
For Need Recommendation On Good Tutorials For Performing Gwas
Popular Question
2.8 years ago,
created a question with more than 1,000 views.
For Does Imputation Always Need Reference Panel
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1679 users visited in the last hour