User: kumar.vinod81

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kumar.vinod81270
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New Delhi
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2 days, 23 hours ago
Joined:
5 years, 10 months ago
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k************@gmail.com

I am M.Sc., Ph.D. in plant biotechnology

Posts by kumar.vinod81

<prev • 101 results • page 1 of 11 • next >
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Answer: A: recode SNPs ATGC illumina
... Export file in PLINK format and you will find a lot of options in PLINK for genotypes recoding. ...
written 4 days ago by kumar.vinod81270
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VIFGC_ovedom function in GenABEL
... I am using non-additive functions implemented in GenABEL. VIFGC function for dominant and recessive non-additive model is working fine but with the same data, VIFGC_ovedom function is giving an error: Error: Error in nlm(GC_VIF_nlm, c(F = F1, K = K1)) : missing value in parameter Also, how to calcu ...
genabel non-additive models written 10 days ago by kumar.vinod81270
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Simulation in quantitative genetics, mapping and gwas
... Could anybody suggest me about the literature on Simulation in quantitative genetics and gwas ? I am a wet lab student and not much aware with this term but I've listen this word so many time and in so many research papers as I am working on GWAS but I am not able to find papers regarding its real m ...
gwas simulation written 2.1 years ago by kumar.vinod81270
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Boxplot of phenotype~SNP1:SNP2
... ![enter image description here][1]Can I generate a boxplot like the one attached in image ? I just know simple one. boxplot(phenotype~SNP1:SNP2) ![boxplot like this][1] [1]: https://s26.postimg.org/447qeuhm1/boxplot.jpg ...
boxplot snp written 2.1 years ago by kumar.vinod81270
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Interpretation for regression coeffecient and T statistics from haplotype association in PLINK
... I have generated haplotype block of a chromosomal region and used it for hap association of quantitative trait in plink. I am ok with R2 and P-val but not with regression coeffecient and t statistics. I am getting two haplotype significantly associated but one with positive and one with negative Reg ...
haplotype association written 2.2 years ago by kumar.vinod81270
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Comment: C: haplotype association with quantitative traits
... Thanks Floris, But I am not able to use --blocks output as myfile.hlist as both are quite different. Do you have any idea? thanks for your help ...
written 2.3 years ago by kumar.vinod81270
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haplotype association with quantitative traits
... I have a done a GWAS study in plant for quantitative trait and found some regions higly significant. Now, I want to see the haplotye structure around these SNPs and their reassociation with the trait so, I can capture the contributing haplotype. Does anyone know any tool which can make it possible? ...
gwas haplotype written 2.3 years ago by kumar.vinod81270 • updated 2.3 years ago by Floris Brenk830
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(Closed) Transpose large excel data containing thousands of rows
... I want to transpose excel data containing 50000 rows and 171 columns but as in excel we dont have many columns so this transpose is not possible. Can I get a transposed notepad or text file of this dataset? Thanks, ...
transpose_large_excel_data written 2.3 years ago by kumar.vinod81270
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Comment: C: Data format to produces a heatmap like this
... Try this for GUI....very good http://www.hiv.lanl.gov/content/sequence/HEATMAP/heatmap_mainpage.html ...
written 2.7 years ago by kumar.vinod81270
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Is academic license for fastPHASE disabled?
... Doest anybody know that academic license for fastPHASE is desabled for research use? Whean I am going to their website, license disabled is written? Does it transeffered somewhere else? Thanks,   ...
fastphase written 2.8 years ago by kumar.vinod81270 • updated 2.8 years ago by cpad01127.5k

Latest awards to kumar.vinod81

Popular Question 4 months ago, created a question with more than 1,000 views. For Snp Information From Ped File In Plink
Popular Question 4 months ago, created a question with more than 1,000 views. For haplotype association with quantitative traits
Great Question 8 months ago, created a question with more than 5,000 views. For Phenotypic Variation Explained By Snps In Gwas
Popular Question 8 months ago, created a question with more than 1,000 views. For Snp Information From Ped File In Plink
Popular Question 8 months ago, created a question with more than 1,000 views. For Transpose large excel data containing thousands of rows
Popular Question 8 months ago, created a question with more than 1,000 views. For fastPHASE output format to PLINK input format
Popular Question 8 months ago, created a question with more than 1,000 views. For Association Mapping: Can Mlm Find More Association Than Glm?
Popular Question 8 months ago, created a question with more than 1,000 views. For What Is Haplotyping In Context Of Gwas?
Popular Question 8 months ago, created a question with more than 1,000 views. For Need Recommendation On Good Tutorials For Performing Gwas
Popular Question 11 months ago, created a question with more than 1,000 views. For Snp Information From Ped File In Plink
Popular Question 11 months ago, created a question with more than 1,000 views. For Association Mapping: Can Mlm Find More Association Than Glm?
Popular Question 11 months ago, created a question with more than 1,000 views. For fastPHASE output format to PLINK input format
Popular Question 11 months ago, created a question with more than 1,000 views. For Need Recommendation On Good Tutorials For Performing Gwas
Popular Question 19 months ago, created a question with more than 1,000 views. For Snp Information From Ped File In Plink
Popular Question 23 months ago, created a question with more than 1,000 views. For Snp Information From Ped File In Plink
Appreciated 23 months ago, created a post with more than 5 votes. For Need Recommendation On Good Tutorials For Performing Gwas
Popular Question 2.0 years ago, created a question with more than 1,000 views. For Snp Information From Ped File In Plink
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Snp Information From Ped File In Plink
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Snp Information From Ped File In Plink
Centurion 2.3 years ago, created 100 posts.
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Does Imputation Always Need Reference Panel
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Need Recommendation On Good Tutorials For Performing Gwas
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Need Recommendation On Good Tutorials For Performing Gwas
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Does Imputation Always Need Reference Panel

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