User: this_is_dieulz

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Posts by this_is_dieulz

<prev • 7 results • page 1 of 1 • next >
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Comment: C: TCGA --- MAF files: no values showing for case_id column
... Thank you very much for taking the time to help me. Sam ...
written 4 weeks ago by this_is_dieulz10
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Comment: C: TCGA --- MAF files: no values showing for case_id column
... Hi Kevin, Thanks for all your help so far. Roughly, I am trying to figure out which proportion of the mutations are associated with males versus female patients, so ideally a final table that has the same number of row as the maf file but with extra columns for the clinical data(mainly the gender). ...
written 4 weeks ago by this_is_dieulz10
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Comment: C: TCGA --- MAF files: no values showing for case_id column
... Kevin, Thanks for your help so far. Without 'join' how could I merge the 2 files to get all the information matched in one file for analysis? The files have 10s of thousands of lines, so I can't manually match them. I am new to this, I would really appreciate some guidance how to accomplish that wi ...
written 5 weeks ago by this_is_dieulz10
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Comment: C: TCGA --- MAF files: no values showing for case_id column
... it seems as if it they would partially match and since I am trying to use linux 'join' to merge the file based on column matches, I am not sure if that would be sufficient . Thanks, Sam ...
written 5 weeks ago by this_is_dieulz10
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Comment: C: TCGA --- MAF files: no values showing for case_id column
... Here is an example of the *submitter_id* "TCGA-4Z-AA7N" and I can't find a matching column in the MAF file. Thanks, Sam ...
written 5 weeks ago by this_is_dieulz10
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Comment: C: TCGA --- MAF files: no values showing for case_id column
... Hi Kevin, I am trying to match the MAF files to the associated clinical data files so that I can get the gender information to match the MAF file information. The clinical data files do not have any of the columns you listed unfortunately. They have the case_id and submitter_id only. Do you know ...
written 5 weeks ago by this_is_dieulz10
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TCGA --- MAF files: no values showing for case_id column
... Hi, I have dowloaded some MAF files form the GDC using the GDC client, and I need the case_id numbers so that I can merge the MAF file with another file also containing case_id numbers. The documentation on the GDC says the case_id column is column 116, but when I try to extract or visualize that c ...
wxs gdc-client tcga gdc cancer written 5 weeks ago by this_is_dieulz10 • updated 5 weeks ago by Kevin Blighe51k

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