User: sh
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Posts by sh
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... Hi,
how to identify human transcription factors & protein kinases? what tools can be useful? ...
written 7 months ago by
sh • 0
• updated
7 months ago by
Mensur Dlakic • 8.3k
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C: Similar packages WGCNA package
... tanx a lot for your help ...
written 12 months ago by
sh • 0
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... Hi Dear
I'm using WGCNA package to build a co-regulation network from my microarray data. I'm following the WGCNA tutorial but I have a error message when I try to run the goodSamplesGenes. Could anyone help me?
gsg = goodSamplesGenes((datExpr), verbose = 3);
Flagging genes and sample ...
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... Hello evry body, i need help
i have a list of DEG then i want to investigate the relationships between gene groups and identify hub genes.i used WGCNA package but i want to use another package,is there any package about this?
...
written 12 months ago by
sh • 0
• updated
12 months ago by
Kevin Blighe ♦ 69k
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C: normalization of Agilent data
... my data is micro array data, i used the limma package to normalize the data and run the struction of boxplot that shows data is normal then i inserted the R output into flex array. there showed the input data is not normal. ...
written 14 months ago by
sh • 0
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... Hello evry body,
We couldn’t input the Agilent data into the flex array. So we used R software for normalize the data, and then plot it in flex array but it didn’t work as well. Now I am wondering if we should use the same package for plotting as we used for data normalization!?
we would be grateful ...
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... Hello every one
I downloaded "series matrix file" Microarray with Agilent platform, there are some issues:
1.how should i know that this is one color/channel or two channel?
2.how can i make this data normal and analysis it?
I would be grateful if you help me ...
written 15 months ago by
sh • 0
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