User: Whetting
Whetting • 1.5k
- Reputation:
- 1,490
- Status:
- Trusted
- Location:
- Bethesda, MD
- Website:
- http://www.vandoorslae...
- Last seen:
- 1 year, 7 months ago
- Joined:
- 8 years, 1 month ago
- Email:
- k********************@gmail.com
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Comment:
C: Confirmation of metagenomic data
... that's an interesting point. It may be cost prohibitive for the "confirming" lab to use something like MiniION. Likewise, requiring a certain technology may not be the best avenue either?
...
written 3.2 years ago by
Whetting • 1.5k
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... Hi,
As a community we are unsure about how to deal with new viruses discovered through metagenomic tools. Currently, the rules state that in order to be considered a novel (papillomavirus) isolate the entire genome has to be cloned and sequenced. However, more and more people are choosing not to fo ...
written 3.2 years ago by
Whetting • 1.5k
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Comment:
C: MEGA: Infer ancestral states
... OK, let me answer your question with a question. What is the goal of ancestral state reconstruction? What question are you asking?
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written 3.2 years ago by
Whetting • 1.5k
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Comment:
C: MEGA: Infer ancestral states
... I assume that these letters are the reconstructed state at each node.
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written 3.2 years ago by
Whetting • 1.5k
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... Do these links not work?
http://www.caida.org/tools/visualization/walrus/#download
...
written 3.4 years ago by
Whetting • 1.5k
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... as a wet scientist I feel like I should take offense to this...But I guess it is just a matter of not really knowing/understanding "the other side"
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written 3.5 years ago by
Whetting • 1.5k
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... Hi, welcome to Biostars. Look into Biopython, Bioperl etc.
...
written 3.5 years ago by
Whetting • 1.5k
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... Hi,
welcome to Biostars. My comment is about a pet peeve of mine. Homology implies shared common descent. So percent homology is meaningless, really. It would be like saying "my wife is 85% pregnant". You either are or, you are not! I believe you mean percent sequence similarity?
As for your quest ...
written 3.6 years ago by
Whetting • 1.5k
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... unless you installed modeller through "Anaconda", it is unlikely that python will find modeller...
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written 3.7 years ago by
Whetting • 1.5k
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... How about running a gel? Sequencing is expensive. Running a gel should show you that you extracted small RNA?
...
written 3.7 years ago by
Whetting • 1.5k
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