User: Whetting

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Whetting1.5k
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Posts by Whetting

<prev • 186 results • page 2 of 19 • next >
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Comment: C: Confirmation of metagenomic data
... that's an interesting point. It may be cost prohibitive for the "confirming" lab to use something like MiniION. Likewise, requiring a certain technology may not be the best avenue either? ...
written 3.0 years ago by Whetting1.5k
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Forum: Confirmation of metagenomic data
... Hi, As a community we are unsure about how to deal with new viruses discovered through metagenomic tools. Currently, the rules state that in order to be considered a novel (papillomavirus) isolate the entire genome has to be cloned and sequenced. However, more and more people are choosing not to fo ...
dnaseq metagenomics forum assembly written 3.0 years ago by Whetting1.5k
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Comment: C: MEGA: Infer ancestral states
... OK, let me answer your question with a question. What is the goal of ancestral state reconstruction? What question are you asking?   ...
written 3.1 years ago by Whetting1.5k
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Comment: C: MEGA: Infer ancestral states
... I assume that these letters are the reconstructed state at each node. ...
written 3.1 years ago by Whetting1.5k
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Answer: A: 3D Phylogenetic Tree Visualization with Phylo3D -- Where is Phylo3D?
... Do these links not work?   http://www.caida.org/tools/visualization/walrus/#download     ...
written 3.2 years ago by Whetting1.5k
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Comment: C: Optimal design for bioinformatics "lab" space?
... as a wet scientist I feel like I should take offense to this...But I guess it is just a matter of not really knowing/understanding "the other side" ...
written 3.3 years ago by Whetting1.5k
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Comment: C: How to find out the reverse complement of DNA from each FASTA formated sequence
... Hi, welcome to Biostars. Look into Biopython, Bioperl etc. ...
written 3.4 years ago by Whetting1.5k
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Comment: C: Homology percentage for different species query
... Hi, welcome to Biostars. My comment is about a pet peeve of mine. Homology implies shared common descent. So percent homology is meaningless, really. It would be like saying "my wife is 85% pregnant". You either are or, you are not! I believe you mean percent sequence similarity? As for your quest ...
written 3.4 years ago by Whetting1.5k
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Comment: C: running modeller through python scripts
... unless you installed modeller through "Anaconda", it is unlikely that python will find modeller... ...
written 3.5 years ago by Whetting1.5k
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Answer: A: evaluate RNA extraction based on sequencing
... How about running a gel? Sequencing is expensive. Running a gel should show you that you extracted small RNA? ...
written 3.6 years ago by Whetting1.5k

Latest awards to Whetting

Popular Question 24 months ago, created a question with more than 1,000 views. For Recursive Pairwise Alignments
Epic Question 2.2 years ago, created a question with more than 10,000 views. For Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Print Alignment To Poster Format
Teacher 2.3 years ago, created an answer with at least 3 up-votes. For A: Aligner That Preserves Case?
Popular Question 2.5 years ago, created a question with more than 1,000 views. For How To Get A List Of All Human Genes Above A Certain Length
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Blast: Homology Or Similarity?
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Restriction For Automated Primer Design
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Determine The Position Of A Snp In A Multiple Sequence Alignment
Teacher 2.7 years ago, created an answer with at least 3 up-votes. For A: Aligner That Preserves Case?
Commentator 2.9 years ago, created a comment with at least 3 up-votes. For C: Pymol/Vmd - Switch To Atomic Level
Scholar 3.0 years ago, created an answer that has been accepted. For A: Split a concatenated alignment into individual gene alignments
Appreciated 3.4 years ago, created a post with more than 5 votes. For A: Aligner That Preserves Case?
Commentator 3.4 years ago, created a comment with at least 3 up-votes. For C: Pymol/Vmd - Switch To Atomic Level
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Renumber Pdb Files To Match Actual Sequence
Great Question 3.6 years ago, created a question with more than 5,000 views. For Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
Popular Question 3.7 years ago, created a question with more than 1,000 views. For Create Vcf File From A Multiple Sequence Alignments
Commentator 3.8 years ago, created a comment with at least 3 up-votes. For C: Pymol/Vmd - Switch To Atomic Level
Scholar 3.8 years ago, created an answer that has been accepted. For A: Split a concatenated alignment into individual gene alignments
Teacher 3.9 years ago, created an answer with at least 3 up-votes. For A: Aligner That Preserves Case?
Supporter 4.4 years ago, voted at least 25 times.
Guru 4.4 years ago, received more than 100 upvotes.

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