User: Adamo0_91

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Adamo0_9110
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Posts by Adamo0_91

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Answer: C: bcftools filter doesn't filter variants based on expression
... I got it now... Brackets... bcftools filter -i '(FORMAT/AD[0:1]*100)/(FORMAT/AD[0:0]+FORMAT/AD[0:1]) >= 25' input.vcf.gz > output.vcf ...
written 5 weeks ago by Adamo0_9110
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Comment: C: dmpFinder from minfi package for EPIC array doesn't show beta values
... When I wanted to check the methylation profile (beta values) of each tag (resulted by dmpFinder as differentialy methylated) I just merged my input data I mean all tags with beta values with dmpFinder result, then I can select only statistically significant tags. By merging I mean something like: ...
written 5 weeks ago by Adamo0_9110
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bcftools filter doesn't filter variants based on expression
... Hello, I'm trying to filter rows from my vcf file based on the condition. I'd like to have only variants where alternate allele is present in at least in 25% of the reads (alternate allele frequency). Usually I'm using SnpSift filter but I'm unable to get to the FORMAT fileds of vcf file by this to ...
vcf written 5 weeks ago by Adamo0_9110

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Scholar 5 weeks ago, created an answer that has been accepted. For C: bcftools filter doesn't filter variants based on expression

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