User: karthick.n

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karthick.n10
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Posts by karthick.n

<prev • 26 results • page 1 of 3 • next >
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Comment: C: Creating bed file for gene specific variant extraction from VCF file
... Hi Amit, I tried this option. But I couldn't find the details for GRCh37. GRCh38 is the only genome available there. I used GRCh37 for my vcf file. Can you please suggest something to resolve this? Regards, Karthick ...
written 29 days ago by karthick.n10
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Comment: C: Creating bed file for gene specific variant extraction from VCF file
... Thanks a lot for your input! I will try this one :) Regards, Karthick ...
written 29 days ago by karthick.n10
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Creating bed file for gene specific variant extraction from VCF file
... Hi, I need to extract variants from VCF file for ACMG genes. I tried to create bed file from UCSC browser. But the bed file contains many accession ids for a single gene. How to make a bed file which will contains only one accession ID for one gene? Regards, Karthick ...
genome vcf acmg written 5 weeks ago by karthick.n10 • updated 5 weeks ago by Amitm2.0k
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Comment: C: ACMG 59 genes
... Thanks a lot @German.M.Demidov ! ...
written 3 months ago by karthick.n10
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ACMG 59 genes
... Hi, I am new to this bioinformatics and i have one doubt. Why we are only focusing 59 genes mentioned by ACMG for secondary or accidental findings? Why we are only reporting the variants in those 59 genes? Can anyone share me an article which can explain this? Or you guys also can answer if possibl ...
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Comment: C: Analysis of variants in selected genes
... Thanks a lot Pierre! I will try and let you know. :) ...
written 3 months ago by karthick.n10
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Analysis of variants in selected genes
... Hi, I have annotated vcf file for my sample. I want to analyse the variants present in the selected genes (around 59 genes mentioned in the ACMG guidelines). Is there any way to filter or select those particular variants present in the regions of those 59 genes? Regards, Karthick ...
vcf genes variants acmg written 3 months ago by karthick.n10
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Secondary findings analysis
... Hi, I have vcf files of 10 samples, but i couldn't perform GWAS analysis since the sample size was very small. But I want to do some analysis to find secondary/incidental findings. Is there any way or method to conduct this analysis? Thanks in advance! Regards, Karthick ...
vcf findings incidental findings genomics variants written 3 months ago by karthick.n10
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Comment: C: Public Data Set Download
... Thanks! Sure. I will check the mentioned databases. Regards, Karthick ...
written 3 months ago by karthick.n10
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Public Data Set Download
... Hi, I need disease specific genomic data of more than 50 samples. Is there any way to download the data set from genomic databases? I m looking for Diabetes Type 2 samples and Diabetic kidney disease samples. Can anyone help me out? I'm new to genomics. If it is VCF file it would be really great. C ...
gwas database genomics publicdata download written 4 months ago by karthick.n10

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