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User: karthick.n

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karthick.n • 10
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5 months ago
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1 year, 4 months ago
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k*********@zifornd.com

Posts by karthick.n

<prev • 26 results • page 2 of 3 • next >
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Comment: C: PLINK: missing covariates?
... I'm also facing the same error. I just have 10 samples. What will be the reason for this error? could you please help me out? Thanks, Karthick ...
written 9 months ago by karthick.n • 10
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Comment: A: Reference Data Set Download from 1000 genomes
... Hi I have created the plink files based on the tutorial mentioned above . But the snp ids are like as follows: (chr:position:allele1:allele2). There is no rs ID. But my sample data has rsIDs. How to compare both when they have inconsistent SNP ids? 1 1:14599:T:A 0 14599 A ...
written 9 months ago by karthick.n • 10 • updated 9 months ago by GenoMax ♦ 96k
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Comment: C: Reference Data Set Download from 1000 genomes
... Thank you very much! Yean. Best, Karthick ...
written 9 months ago by karthick.n • 10
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Reference Data Set Download from 1000 genomes
... Hi, I want to perform population stratification analysis. I need to download indian genomes along with other ancestry genomes from 1000 genomes data set. How to download that. There are so many release in 1000 genomes. Can you post the link? Regards, Karthick ...
1000genomes 1kg download written 9 months ago by karthick.n • 10
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Comment: C: IDAT to VCF conversion
... Thanks a lot for your response! Regards, Karthick ...
written 10 months ago by karthick.n • 10
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Comment: C: IDAT to VCF conversion
... Thanks for your response! ...
written 10 months ago by karthick.n • 10
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IDAT to VCF conversion
... Hi, I am working on array data and it's a illumina Infinium based array. But in my case it's a customized kit so i don't have a cluster file for the idat to gtc file conversion. But I have idat file and bpm file. Can anyone help me on this ? Is there any way to process the idat file without cluster ...
cluster arraysequencing idat genomestudio written 10 months ago by karthick.n • 10 • updated 6 months ago by curious • 500
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GTF to GFF conversion
... Can someone suggest me some command line for the conversion of GTF to GFF in linux ? I could see only the conversion of GFF to GTF in the forum. Thanks in Advance! Karthick ...
htseq rna-seq written 15 months ago by karthick.n • 10 • updated 15 months ago by Juke34 • 5.1k
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Pair Orientation in IGV
... I'm new to genomics platform. When I was analyzing the alignment data in IGV i came across the word "Pair Orientation"with values "F1R2", "F2R1". I don't know what they are. Can someone explain what these values are? Thanks in advance! - Karthick ...
genome assembly next-gen gene sequencing written 15 months ago by karthick.n • 10
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Comment: C: Undefined variable error in linux
... Thanks a lot Amar :) For your responses! ...
written 15 months ago by karthick.n • 10

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