User: karthick.n

gravatar for karthick.n
karthick.n10
Reputation:
10
Status:
New User
Location:
Last seen:
2 months, 1 week ago
Joined:
1 year, 1 month ago
Email:
k*********@zifornd.com

Posts by karthick.n

<prev • 26 results • page 2 of 3 • next >
0
votes
0
answers
1.1k
views
0
answers
Comment: C: PLINK: missing covariates?
... I'm also facing the same error. I just have 10 samples. What will be the reason for this error? could you please help me out? Thanks, Karthick ...
written 6 months ago by karthick.n10
0
votes
1
answer
209
views
1
answers
Comment: A: Reference Data Set Download from 1000 genomes
... Hi I have created the plink files based on the tutorial mentioned above . But the snp ids are like as follows: (chr:position:allele1:allele2). There is no rs ID. But my sample data has rsIDs. How to compare both when they have inconsistent SNP ids? 1 1:14599:T:A 0 14599 A ...
written 6 months ago by karthick.n10 • updated 6 months ago by genomax92k
0
votes
1
answer
209
views
1
answers
Comment: C: Reference Data Set Download from 1000 genomes
... Thank you very much! Yean. Best, Karthick ...
written 6 months ago by karthick.n10
0
votes
1
answer
209
views
1
answer
Reference Data Set Download from 1000 genomes
... Hi, I want to perform population stratification analysis. I need to download indian genomes along with other ancestry genomes from 1000 genomes data set. How to download that. There are so many release in 1000 genomes. Can you post the link? Regards, Karthick ...
1000genomes 1kg download written 6 months ago by karthick.n10
0
votes
2
answers
453
views
2
answers
Comment: C: IDAT to VCF conversion
... Thanks a lot for your response! Regards, Karthick ...
written 7 months ago by karthick.n10
0
votes
2
answers
453
views
2
answers
Comment: C: IDAT to VCF conversion
... Thanks for your response! ...
written 7 months ago by karthick.n10
0
votes
2
answers
453
views
2
answers
IDAT to VCF conversion
... Hi, I am working on array data and it's a illumina Infinium based array. But in my case it's a customized kit so i don't have a cluster file for the idat to gtc file conversion. But I have idat file and bpm file. Can anyone help me on this ? Is there any way to process the idat file without cluster ...
cluster arraysequencing idat genomestudio written 7 months ago by karthick.n10 • updated 3 months ago by curious460
4
votes
1
answer
842
views
1
answer
GTF to GFF conversion
... Can someone suggest me some command line for the conversion of GTF to GFF in linux ? I could see only the conversion of GFF to GTF in the forum. Thanks in Advance! Karthick ...
htseq rna-seq written 12 months ago by karthick.n10 • updated 12 months ago by Juke344.9k
0
votes
0
answers
870
views
0
answers
Pair Orientation in IGV
... I'm new to genomics platform. When I was analyzing the alignment data in IGV i came across the word "Pair Orientation"with values "F1R2", "F2R1". I don't know what they are. Can someone explain what these values are? Thanks in advance! - Karthick ...
genome assembly next-gen gene sequencing written 12 months ago by karthick.n10
1
vote
2
answers
500
views
2
answers
Comment: C: Undefined variable error in linux
... Thanks a lot Amar :) For your responses! ...
written 12 months ago by karthick.n10

Latest awards to karthick.n

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2250 users visited in the last hour