User: trinidadmartinc

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Posts by trinidadmartinc

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snpEff build not working with gff3
... Hello all!!! I have sequenced the strain we have in the lab and now I want to use that assembly to make snp calling against other strains. The problem is while building the database with snpEff, I am always having this same error and I don't understand why : > java -jar snpEff.jar build -gff3 - ...
software error assembly snp written 20 days ago by trinidadmartinc0 • updated 4 days ago by Biostar ♦♦ 20
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Comment: C: SNPEff database building error
... Hello all!!! I am having the same error and I don't undestand why.... My sequences.fa has headers like this: >tb50_4_tig00000001_BK006938 >tb50_12_tig00000004_BK006945 And my genes.gff looks like this: tb50_4_tig00000001_BK006938 exonerate:protein2genome:local match 771461 771 ...
written 20 days ago by trinidadmartinc0

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