User: wax4001

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wax40010
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Posts by wax4001

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Comment: C: Interprete gene body coverage plot
... so you are saying only a few gene's few sequence got overrepresented in the case and causing this overall jump ? I have check the alignment distribution across the genome which looks normal. DO you think removing the overrepresented sequence would be a way to correct the data ? ...
written 3 months ago by wax40010
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Comment: C: Interprete gene body coverage plot
... I do find some over-represented sequence. However, this is geneBody coverage plot. if a transcript is over-represented, why would it cause a jump at the position and that is like 10 bp ? ...
written 3 months ago by wax40010
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Comment: C: Interprete gene body coverage plot
... Thanks, first time using. Can you see it now ? ...
written 3 months ago by wax40010
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Interprete gene body coverage plot
... I am wondering what could cause the jump in the plot ? The plot is generated using Qualimap. BOTH the jump sample shows weird expression data that I am trying to understand why and maybe troubleshoot. I am begin to believe that the sample have DNA contamination but I am wondering how to explain ...
qc genebody_coverage rna-seq written 3 months ago by wax40010 • updated 3 months ago by yztxwd290

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