User: salvatoredanilopalumbo

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Posts by salvatoredanilopalumbo

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BLOSUM62 in Python
... Hi, how can i implement the BLOSUM62 matrix in Python without modules like Scikit-Bio or Bio? Can someone give me an hand? Thanks. ...
python needleman-wunsch blosum62 alignment python3 written 5 months ago by salvatoredanilopalumbo0 • updated 5 months ago by a.zielezinski9.1k
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Comment: C: Needleman-Wunsch with Python
... Ok, i fixed the code ...
written 5 months ago by salvatoredanilopalumbo0
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Comment: C: Needleman-Wunsch with Python
... Yup, sorry but i'm newbie ...
written 5 months ago by salvatoredanilopalumbo0
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Needleman-Wunsch with Python
... Hi, I'm implementing the Needleman-wunsch algorithm with python and I don't know how to use the open penalty gap. Also, i want to use the BLOSUM62 matrix. Can anyone help me? Thanks import pandas as pd import numpy as np from Bio.SubsMat import MatrixInfo seq1 ='ACGGTC ...
gap python alignment blosum62 gap penalty written 5 months ago by salvatoredanilopalumbo0 • updated 4 months ago by salihakevserkavuncu0

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