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Posts by dhlsl
Comment: C: How to down-sample a full data
... thanks, Devon! could you please tell what do you mean by subsampling typically few times? i do understand that in order for it to be robust its better to do subsampling several times.. but i dont know how to understand how many times? and how to do it using seqtk? For instance, if I need to downsamp ...
... Hi! thanks for the comment. I am currently working with 3' RNA SE seq data and I cannot decide on alignment method.. could you please recommend something? Its a human cancer, and I do STAR alignment for sure, but I was wondering if Kallisto could work as well; but it requires fragment length and sd ...
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