User: studia.biot

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studia.biot20
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Posts by studia.biot

<prev • 7 results • page 1 of 1 • next >
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(Closed) What is soft and hard sphere?
... Many articles mention the potential of a soft and hard spheres and I do not understand what exactly are these soft and hard spheres? ...
soft sphere hard sphere protein written 5 weeks ago by studia.biot20
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Can I change the rDock docking protocol?
... Hello, rDock uses the following algorithms: genetic algorithm, monte carlo and simplex minimization. I wanted to ask if I can skip the monte carlo simulation and remove the code from the docking file? Meg ...
molecular docking rdock written 4 months ago by studia.biot20
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How to create MAplot in R for only one sample?
... Hello! I have an affybatch structure that consists of 300 CEL files and I want to create a MAplot chart from the oligo package (R) for each CEL file separately. How to do it? Meg ...
R affy written 5 months ago by studia.biot20
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What is the difference between multiple docking and ensemble docking?
... I have an article in which two types of multiple protein structures docking are described (multiple docking and ensemble docking) but it is not clearly stated how these approaches differ. ...
molecular docking written 11 months ago by studia.biot20 • updated 11 months ago by Jean-Karim Heriche23k
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AutoDockTools - Utilities24
... Hello. I need to prepare receptor and ligand pdbqt file to AutoDock. And I use python3.7, windows 10. How can I run the autodock script from Utilities24 folder. ...
software protein autodock docking written 12 months ago by studia.biot20
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Docking using Autodock4
... Hello. I need to do two docking in autodock 4. The first one is soft docking and the second is re-docking without the smooth potential. I want to ask you how could I turn on/off the smooth factor in AutoDockTool interface? ...
softdocking autodock docking written 12 months ago by studia.biot20 • updated 12 months ago by Mensur Dlakic7.2k
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Soft docking -AutoDock4
... Hello. I am working with AutoDock 4 and I need to reduce van der Waals potential to obtain soft docking. And I want to ask you how can I turn on/off the smooth parameter? ...
potential autodock soft protein docking written 12 months ago by studia.biot20

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