User: rachel

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rachel30
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r*********@cs.toronto.edu

Posts by rachel

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Comment: C: Whole-genome percentile values in bigWig files
... I just wanted to say that your first option worked beautifully! (I already had everything set up to use bedops so it was easy to adapt to). Thank you so much for responding to my question :) ...
written 8 months ago by rachel30
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Whole-genome percentile values in bigWig files
... Hi all, I'm looking to compute the k-th percentile value of some bigWig files (ChIP-seq) across the whole genome. For example, I'd like to know the 99.99th percentile value of a bigWig file across the whole genome. I'm aware of wiggletools histogram (unfortunately does not provide exact percentile ...
chip-seq wiggle bigwig statistics written 9 months ago by rachel30 • updated 9 months ago by Alex Reynolds30k
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Comment: C: Get percentile cutoff from bigwig files
... Sorry to bring this post back from the dead. But I've found myself with the same situation as the OP, with needing, say, the 99th percentile value for a bigWig across the whole genome. However, I realized that using BEDOPS in this manner results in the kth percentile value *per-chromosome*. Is there ...
written 10 months ago by rachel30

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