User: brianna.flynn

gravatar for brianna.flynn
Reputation:
10
Status:
New User
Location:
Last seen:
3 weeks ago
Joined:
4 weeks ago
Email:
b************@utexas.edu

Posts by brianna.flynn

<prev • 2 results • page 1 of 1 • next >
0
votes
2
answers
148
views
2
answers
Answer: A: Getting scientific name (ssciname) in Blastn output
... Hi Amar! I finally got it to work for me by downloading the accession2taxid file from the NCBI FTP site, and then creating a new blast database with the taxids using the option `-taxid_map` following this post: https://www.biostars.org/p/76551/ ...
written 21 days ago by brianna.flynn10
1
vote
2
answers
148
views
2
answers
Getting scientific name (ssciname) in Blastn output
... Hey all, I would like to get the scientific names of each of my blast hits from blastn run locally. I have downloaded the taxdb.tar.gz taxonomy database from NCBI and have set the $BLASTDB variable to the directory with my blast database and query contigs. In my tabbed output, all I get is an 'N/A ...
alignment blast written 27 days ago by brianna.flynn10

Latest awards to brianna.flynn

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1010 users visited in the last hour